BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0012.p (296 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 170 2e-42 BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 152 9e-37 lin1842 [G] COG1175 ABC-type sugar transport systems, permease c... 150 3e-36 slr1202 [G] COG1175 ABC-type sugar transport systems, permease c... 149 4e-36 alr0789 [G] COG1175 ABC-type sugar transport systems, permease c... 149 5e-36 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 156/260 (60%), Gaps = 4/260 (1%) Query: 13 LLFLLPFLIVYGLFTIWPMFKGVEMTFYKWTLIRKMDFLGWDNYSKVLQDREVWEALGHS 72 +FLLP L+ + +F P+ + ++F W L+ + F G++NY ++ D E W++ ++ Sbjct: 14 CIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDPEFWKSFRNT 73 Query: 73 LIFVVLTTPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVASYLGLFVFQPYTG 132 + F++ P++++L ++ AL+ N+K L+ F+R+++F+P + S S + ++F P G Sbjct: 74 ITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYG 133 Query: 133 LVNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHLSAIQEIPDEIYE 192 L+N L LI + G WLT+ + A IA+ + + W +GF +L L +Q I YE Sbjct: 134 LINYFLSLIGI--AGPN--WLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYE 189 Query: 193 AARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTGGGPLDSTRPIIQ 252 AA +DGA + + IT+P L P T +T++ +I SF+VF Q+ I+T GGP +T ++Q Sbjct: 190 AANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQ 249 Query: 253 LIYQTGFKSNDLGYAATMSY 272 IY F+ ++GYA+ MS+ Sbjct: 250 NIYNHAFRYFEMGYASAMSW 269 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 157/261 (60%), Gaps = 6/261 (2%) Query: 14 LFLLPFLIVYGLFTIWPMFKGVEMTFYKWTLIR-KMDFLGWDNYSKVLQDREVWEALGHS 72 LFL+P L V+ LF P+F+ V ++ ++W+ + F+G NY ++ D ++AL ++ Sbjct: 11 LFLVPAL-VFLLFVYIPIFENVFLSLFQWSSFSPEKTFIGLKNYVELFHDPVFYQALTNN 69 Query: 73 LIFVVLTTPTMLVLSISLALIANRKSMLQ--KFYRSIFFIPSVLSVAVASYLGLFVFQPY 130 +++ V++ + + LA + K + + F+R++FF+P V+S+ V + L F++ P Sbjct: 70 VLYAVISIVCQVFGGLILAAVLEDKLVRKWSPFFRTVFFLPVVISMTVIALLFDFIYNPE 129 Query: 131 TGLVNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHLSAIQEIPDEI 190 TGL+N +L I L WL + A +++ ++ W +VG+ +L++ +IQ+IPDE+ Sbjct: 130 TGLLNQLLQAIGL--DQLTRAWLGDDSTAMLSVIFVSQWQSVGYIAMLYIVSIQKIPDEL 187 Query: 191 YEAARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTGGGPLDSTRPI 250 YEAARLDGAG Q F+ IT+P ++ ++ + +F VF + YI+TGGGP ++ + Sbjct: 188 YEAARLDGAGKIQQFFHITVPQTKEMSFVAVVMTLTGAFTVFNEPYILTGGGPGKASEVL 247 Query: 251 IQLIYQTGFKSNDLGYAATMS 271 +Y++ F + +GYA+ ++ Sbjct: 248 STFLYKSAFTKDMMGYASAIA 268 >lin1842 [G] COG1175 ABC-type sugar transport systems, permease components Length = 297 Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 139/226 (61%), Gaps = 5/226 (2%) Query: 47 KMDFLGWDNYSKVLQDREVWEALGHSLIFVVLTTPTMLVLSISLALIAN-RKSMLQKFYR 105 K++F+G DNY ++QD +++ ++L +VV+ P ++V S+ +AL+ N ++ + +F+R Sbjct: 50 KINFVGVDNYVNIMQDPVFLKSIFNTLFYVVIGVPLVIVCSLGIALMINFSQAKIFQFFR 109 Query: 106 SIFFIPSVLSVAVASYLGLFVFQPYTGLVNSVLHLIHLLPGGTEIFWLTETRLAWIAITL 165 IF+ PS+ +V + + +++ P GL+N +L + L P + WL + +A +++ + Sbjct: 110 LIFYTPSITNVVAVAVVWSYLYNPRFGLLNYLLSFLDLGP----VPWLQDPTIAKLSLII 165 Query: 166 ITLWWTVGFNFILHLSAIQEIPDEIYEAARLDGAGDRQMFWRITLPYLAPITKTITMLQI 225 + +W +G N I+ L+A+Q IP E YEAA LDGA RQ ++IT+P L +T+ + Sbjct: 166 LAVWRAIGVNMIIFLAALQGIPREYYEAASLDGANSRQQLFKITVPMLRFAIFFVTVTTM 225 Query: 226 IASFKVFMQIYIVTGGGPLDSTRPIIQLIYQTGFKSNDLGYAATMS 271 I + F + +++T GGPLDST + IYQ GF+ + GYAA S Sbjct: 226 IGWLQFFEEPFVMTEGGPLDSTNSVALFIYQNGFQLSKFGYAAAGS 271 >slr1202 [G] COG1175 ABC-type sugar transport systems, permease components Length = 298 Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 153/270 (56%), Gaps = 6/270 (2%) Query: 4 KKWRADAQALLFLLPFLIVYGLFTIWPMFKGVEMTF--YKWTLIRKMDFLGWDNYSKVLQ 61 ++W A LFLLP L++ G +P + ++F Y+ L + ++G N+ ++ + Sbjct: 8 RRWPRGATPYLFLLPALVMLGATVFYPALQAFSLSFTQYELDLTKAPAWVGLANFERLWR 67 Query: 62 DREVWEALGHSLIFVVLTTPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVASY 121 DR W H+L+++V P +++L + LA++ N+K ++R ++ P + S+ VA Sbjct: 68 DRVFWLTFRHTLLYLVGVVPLLIMLPLGLAILVNQKLRGITWFRMAYYTPVITSIVVAG- 126 Query: 122 LGLFVFQPYTGLVNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHLS 181 + G++N +L L+ G I WLT LA ++ ++T+W +G+ +++L+ Sbjct: 127 IAWKALYASNGILNQILALLGFSDG---IPWLTSPNLALWSVMVVTVWKGLGYYMVIYLA 183 Query: 182 AIQEIPDEIYEAARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTGG 241 +Q IP E+YEA +DGA + W IT+P + P + +L I++ KVF ++YI+T G Sbjct: 184 GLQAIPQELYEAGAIDGADGWRQHWDITIPLMRPYCFLVGVLSSISALKVFEEVYIMTQG 243 Query: 242 GPLDSTRPIIQLIYQTGFKSNDLGYAATMS 271 GPL++++ ++ +Y+ F+ ++ YA+ + Sbjct: 244 GPLNASKTVVYYVYERAFQDLEMNYASAIG 273 >alr0789 [G] COG1175 ABC-type sugar transport systems, permease components Length = 359 Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 17/253 (6%), Positives = 41/253 (16%), Gaps = 6/253 (2%) Query: 15 FLLPFLIVYGLFTIWPMFKGVEMTFYKWTLIRKMDF-LGWDNYSKVLQDREVWEALGHSL 73 + + G + TL F + + L+ + + + Sbjct: 20 LRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLE 79 Query: 74 IFVVLTTPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVASYLGLFVFQPYTGL 133 F + + N + + S+ +V L V Sbjct: 80 GFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPE-QAE 138 Query: 134 VNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHLSAIQEIPDEIYEA 193 + A + I + Sbjct: 139 AFYHRLTQ----CKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAAS 194 Query: 194 ARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTGGGPLDSTRPIIQL 253 + W L ++ + + + Sbjct: 195 GGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVG 254 Query: 254 IYQTGFKSNDLGY 266 T D Sbjct: 255 YGGTWVSERDTRL 267 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,699,195 Number of extensions: 806304 Number of successful extensions: 3279 Number of sequences better than 1.0e-05: 169 Number of HSP's gapped: 3053 Number of HSP's successfully gapped: 170 Length of query: 296 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 190 Effective length of database: 26,153,027 Effective search space: 4969075130 Effective search space used: 4969075130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)