BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0011.p (464 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll3590 [G] COG1653 ABC-type sugar transport system, periplasmic... 199 8e-51 lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic... 78 2e-14 SP1690 [G] COG1653 ABC-type sugar transport system, periplasmic ... 77 7e-14 SMb20231 [G] COG1653 ABC-type sugar transport system, periplasmi... 73 1e-12 CAC0429 [G] COG1653 ABC-type sugar transport system, periplasmic... 70 9e-12 >mll3590 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 199 bits (506), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 131/402 (32%), Positives = 208/402 (51%), Gaps = 31/402 (7%) Query: 75 NLSFWTLFDGGDGDNMQKLVDEFNKSHP-DIKVKNTKLVWAE-YYTKLITAVGNGNGPDI 132 +++W GGDG M++++ +FN +H IK+ T L W +Y K+ T+ G PD+ Sbjct: 21 TVAWWDFLGGGDGVRMKQMISDFNAAHVGKIKIDATTLEWGTPFYAKVQTSAAVGEAPDV 80 Query: 133 GISHTSRLPDLINQGVVTDLDAV-AGEAGVDWTTFNQNLLDATVVDGKHYAVPIDTHPFI 191 H SR+P ++Q ++ ++ A + G+ + F Q + A VDGK YAVP+DTHP + Sbjct: 81 MTYHASRIPLAVSQDLLEEITADDMSKMGLSASDFAQTTMGAVTVDGKQYAVPLDTHPIV 140 Query: 192 MYYNKKLLKEAGLLGDDGKPVLEQSADGFLAFLKTLKEKLPAKTTPFALSNSNDDP---Y 248 +YYN+ LLK+AG+LGDDG+PV ++ + F A L+ LK+ F L + D Y Sbjct: 141 LYYNRVLLKKAGVLGDDGRPVGMKNKEEFTATLQKLKD----AGVEFPLGSVTADGNFMY 196 Query: 249 RLWWALYSQLGGNDLVSDDLKKAEIDKAKGIQAAEYIQKLFTEGYIKKNDPDFYKN---F 305 R ++L Q GG L ++ D K + A + + +T+ ++ D+ F Sbjct: 197 RTIYSLVCQQGGELLTGNEFLAG--DNGKKLANALAVLQGWTKAGLQSTYTDYPATVALF 254 Query: 306 QSGTAAIMMTGVWATGTW----EATKGLEFGAMPIPKLFGQEATWGDSHTIILPLTKSED 361 SG AA+M+ GVW T + K ++GA+ IP +F + T+ DSH+ +P K ++ Sbjct: 255 TSGKAAMMINGVWEVPTMTDLAKQGKLFDWGAVEIPVIFDKPCTYADSHSFAIPKNKGKE 314 Query: 362 --PAKRKAALIFADYIAENGQIWAKAGHIPSKPSVLEKQEYKDMPYRSDYAAVAGTVKFN 419 P KR A L +I ++ WA AGHIP+ V E EYK M + Y+ + + F+ Sbjct: 315 ISPEKRAAVLEVISWIDKHSLFWATAGHIPAYKPVTETAEYKAMQPNATYSTLTANMIFD 374 Query: 420 KPSTKN------WQIRDNVSFKILNEVWANKMKPAEAMDKME 455 STK + I N LN +M P EA+ ++ Sbjct: 375 PKSTKAGVAGPIFDIMSNYFVPTLN----GEMDPGEAVKSIK 412 >lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 91/409 (22%), Positives = 170/409 (41%), Gaps = 48/409 (11%) Query: 76 LSFWTLFDGGDGDNMQKLVDEFNKSHPDIKVKNTKLVWAEYYTKLITAVGNGNGPDIGIS 135 ++++ DG + K+V EF K +PDIKV + + +Y+TKL T + G+ PD Sbjct: 33 ITYYQFSAPADGKALDKMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPDAFEL 92 Query: 136 HTSRLPDLINQGVVTDLDA-VAGEAGVDWTTFNQNLLDATVVDGKHYAVPIDTHPFIMYY 194 + +GV+ DL + + + D +T N+ DA DGK Y + + Y Sbjct: 93 NYETFMQYAEKGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIY 152 Query: 195 NKKLLKEAGLLGDDGKPVLE---QSADGFLAFLKTLKEKLPAKTTPFALSNSNDDPYRLW 251 NK L +AG+ P + + + L K K+ + P ++ + Sbjct: 153 NKDLFDKAGV----EYPTADWTWKDEEAAAKKLTDAKNKVWGTSQPVTMNE--------F 200 Query: 252 WALYSQLGGNDLVSDDLKKAEIDKAKGIQAAEYIQKLFTEGYIKKNDPDFYKN-----FQ 306 + + +Q GG+ + D+ K I+ + ++A ++ TE + + D F Sbjct: 201 FKVAAQNGGS-IFDKDMTKTTINSPENVEALTHLTNEVTESKVAPSPSDLSGQLPEDLFM 259 Query: 307 SGTAAIMMTGVW-------ATGTWEATKGLEFGAMPIPKLFGQEATWGDSHTIILPLTKS 359 +G A++ TG+W A W+ +E G Q+AT H + S Sbjct: 260 NGQIAMLHTGIWLFDMFQDAPFKWDVQ--VEAGN-------KQKAT----HFFANGIGVS 306 Query: 360 EDPAKRKAALIFADYIAENGQI----WAKAGHIPSKPSVLEKQEYKDMPYRSDYAAVAGT 415 +D K++AA FA +++ N + A +P+ + Q Y D + AV + Sbjct: 307 KDSDKKEAAFKFASFMSANKEAAKIRIANNWELPATENKEILQPYLDATPPDNREAVFES 366 Query: 416 VKFN--KPSTKNWQIRDNVSFKILNEVWANKMKPAEAMDKMEAGVQKEL 462 +++ P K+W + + +V + P +A+ E + K + Sbjct: 367 LQYMVLPPVVKDWNKISDYTNSEFEKVLNGESTPEKALKNSEDNINKTM 415 >SP1690 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 445 Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 15/218 (6%) Query: 76 LSFWTLFDGGDG-DNMQKLVDEFNKSHPDIKVKNTKLVWAEYYTKLITAVGNGNGPDIGI 134 ++ W F G +++QK D F + HP K+K W ++YTK T + NGN PDI Sbjct: 43 ITMWHSFTQGPRLESIQKSADAFMQKHPKTKIKIETFSWNDFYTKWTTGLANGNVPDIST 102 Query: 135 SHTSRLPDLINQGVVTDLDAVAGEAGVDWTTFNQNLLDATVVDGKHYAVPIDTHPFIMYY 194 + +++ +++N + L+ G D FN+ L+ + +Y+VP+ +H +M+ Sbjct: 103 ALPNQVMEMVNSDALVPLNDSIKRIGQD--KFNETALNEAKIGDDYYSVPLYSHAQVMWV 160 Query: 195 NKKLLKEAGLLGDDGKPVLEQSADGFLAFLKTLKEK-LPAKTTPFALSNSNDDPYRLWWA 253 LLKE + + ++ D K LKE + + PF +ND + Sbjct: 161 RTDLLKEHNI-------EVPKTWDQLYEASKKLKEAGVYGLSVPFG---TNDLMATRFLN 210 Query: 254 LYSQLGGNDLVSDDLKKAEIDKAKGIQAAEYIQKLFTE 291 Y + GG L++ DL KA++ +Y KL+ E Sbjct: 211 FYVRSGGGSLLTKDL-KADLTSQLAQDGIKYWVKLYKE 247 >SMb20231 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 451 Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/281 (27%), Positives = 119/281 (42%), Gaps = 36/281 (12%) Query: 76 LSFWTLFDGGDGDNMQ-----KLVDEFNKSHPDIKVKNTKLVWAEYYT--KLITAVGNGN 128 L FW + G Q K V ++N SHP K++ + +EY + KL TA +G Sbjct: 48 LKFWQFYAPGGPVASQVAWFEKTVADWNDSHPQ-KIELEFIPNSEYISGPKLATAFASGE 106 Query: 129 GPDIGISHTSRLPDLINQGVVTDLDA-VAGEAGVDWTTFNQNLLDATVVDGKHYAVPIDT 187 GPDI I N GV+ DL + +A D F ++++ +VDGK + +P++ Sbjct: 107 GPDIFIISPGDFLRYYNGGVLKDLTPFIDDKAKAD---FPESVIANRMVDGKIFGIPMEV 163 Query: 188 HPFIMYYNKKLLKEAGLLGDDGKPVLEQSADGFLAFLKTLKEKLPAKTTP--FALSNSND 245 P MYY+ K +EAGL +D + ++ + L K L TTP F + Sbjct: 164 EPMAMYYSVKAFEEAGLNEND----VPKTWEALLEVAKKL-------TTPERFGVMFETQ 212 Query: 246 DPYR---LWWALYSQLGGNDLVSDDLKKAEIDKAKGIQAAEYIQKLFTEGYIKKN----- 297 Y W+ Q GG +D K+ D +QA ++ Q G + Sbjct: 213 PGYYQNFTWYPFLWQGGGEFQTADG--KSSFDSPATVQALKFWQDAINSGVAPRQIMGAG 270 Query: 298 DPDFYKNFQSGTAAIMMTGVWATGTWEA-TKGLEFGAMPIP 337 D N SG A+ G+W ++ K ++G +P Sbjct: 271 GHDTIANLASGYVAMQNVGIWGISQLQSNAKDFQYGVFRLP 311 >CAC0429 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 447 Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 90/343 (26%), Positives = 142/343 (41%), Gaps = 44/343 (12%) Query: 74 VNLSFWTLFDGGDGDNMQKLVDEFNKSHPDIKVK-NTKLVWAEYYTKLITAVGNGNGPDI 132 V ++FW G +G+ + K+V++FN SH DIKVK + + E KL +A G PDI Sbjct: 35 VQITFWHAMSGKNGEALNKMVEDFNNSHSDIKVKAEFQGKYDEELNKLKSAEKGGEAPDI 94 Query: 133 GISHTSRLPDLINQGVVTDLDAVAGEAGVDWTTFNQNLLDATVVDGKHYAVPIDTHPFIM 192 + +I+ + + D ++ NLL V+ K Y++P ++ I+ Sbjct: 95 VQVYDIGTRFMIDSKWAEPIQNFIDKDKYDTSSLEPNLLAYYTVNNKLYSMPFNSSTPIL 154 Query: 193 YYNKKLLKEAGLLGDDGKPVLEQSADGFLAFLKTLKE-KLPAKTTPFALSNSNDDPYRLW 251 YYNK KEA L D KP KT E + +K S+ N Y Sbjct: 155 YYNKSAFKEADL--DPNKPP------------KTFSELERYSKALAKKDSSGNVTRYGFS 200 Query: 252 WALYSQLGGNDLV-------------SDDLKKAEIDK-AKGIQAAEYIQKLFTEGYI--- 294 A+Y L LV S K + D G++ + ++L GY+ Sbjct: 201 MAIYGWLFEQYLVKQGKNYVNNGNGRSSAATKVDFDSNGGGLKFLKEWKQLVDSGYVGNL 260 Query: 295 KKNDPDFYKNFQSGTAAIMMTGVWATGTWEATKG--LEFGAMPIPKLFGQE---ATWGDS 349 +N+ D F +G A+ + + G E G P+P G + G + Sbjct: 261 GRNEDDTENAFIAGKTAMYIESTADLKHDLNSIGGRFELGTAPLPSFDGTSDGGVSIGGA 320 Query: 350 HTIILPLTKSEDPAKRKAALIFADYIAENGQ--IWA-KAGHIP 389 IL K++D K+KAA F Y+ + Q W+ + G+ P Sbjct: 321 SMWIL---KNKDAEKQKAAFEFIKYMVSSKQQAYWSTETGYFP 360 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 34,570,308 Number of extensions: 1505167 Number of successful extensions: 2274 Number of sequences better than 1.0e-05: 43 Number of HSP's gapped: 2263 Number of HSP's successfully gapped: 43 Length of query: 464 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 354 Effective length of database: 25,691,691 Effective search space: 9094858614 Effective search space used: 9094858614 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)