BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0003.p (157 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yjdI [S] COG2606 Uncharacterized conserved protein 140 1e-33 FN1373 [S] COG2606 Uncharacterized conserved protein 93 2e-19 ybaK [S] COG2606 Uncharacterized conserved protein 92 4e-19 ZybaK [S] COG2606 Uncharacterized conserved protein 92 4e-19 >BS_yjdI [S] COG2606 Uncharacterized conserved protein Length = 76 Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 0/156 (0%), Positives = 0/156 (0%), Gaps = 1/156 (0%) Query: 2 QVTKTNAMRILDTRKIAYEIHMYDNEDGQIHGTAVAEKVGLPPETVFKTLVAHSGVN-LY 60 + + Y G + V + V + Sbjct: 4 ALLDGGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLKRKPWIMPDEVDVATVVKVI 63 Query: 61 VFVIPVXXXXXXXXXXXXXXXXXXXMLPVKDLLKWTGYVRGGCSPVGMKKLYPTFIDSSA 120 Sbjct: 64 123 Query: 121 GALATMAVSGGKIGLQMELAPEQLAGVINAGFCELI 156 Sbjct: 124 159 >FN1373 [S] COG2606 Uncharacterized conserved protein Length = 162 Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 75/141 (53%), Gaps = 1/141 (0%) Query: 5 KTNAMRILDTRKIAYEIHMYDNEDGQIHGTAVAEKVGLPPETVFKTLVA-HSGVNLYVFV 63 KTNA+R L+ KI + + Y+ ++ + +VA K VFKTLV + + V Sbjct: 3 KTNAIRELEIHKIEHIVREYEVDEEHLDAVSVALKTNKDITRVFKTLVLLNEKREMVVAC 62 Query: 64 IPVXXXXXXXXXXXXXXXXXXXMLPVKDLLKWTGYVRGGCSPVGMKKLYPTFIDSSAGAL 123 IP MLP+KDL TGYVRGGCSP+G+KK + FI SA Sbjct: 63 IPGMEKLDLKKLGKLSGHKKLEMLPMKDLFSMTGYVRGGCSPIGIKKRHSIFIHESALDN 122 Query: 124 ATMAVSGGKIGLQMELAPEQL 144 T+ VSGG GLQ+E+ P++L Sbjct: 123 KTILVSGGLRGLQIEIEPQKL 143 >ybaK [S] COG2606 Uncharacterized conserved protein Length = 159 Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 4/156 (2%) Query: 6 TNAMRILDTRKIAYEIHMYDNEDGQIH-GTAVAEKVGLPPETVFKTL-VAHSG--VNLYV 61 T A+++L+ KI+++IH Y+++ + + G V +K+GL P+ V+KTL VA +G +L V Sbjct: 2 TPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAV 61 Query: 62 FVIPVXXXXXXXXXXXXXXXXXXXMLPVKDLLKWTGYVRGGCSPVGMKKLYPTFIDSSAG 121 V PV M + TGY+ GG SP+G KK PT ID+ A Sbjct: 62 AVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGGISPLGQKKRLPTIIDAPAQ 121 Query: 122 ALATMAVSGGKIGLQMELAPEQLAGVINAGFCELIK 157 AT+ VSGGK GL +ELA LA +++A F ++ + Sbjct: 122 EFATIYVSGGKRGLDIELAAGDLAKILDAKFADIAR 157 >ZybaK [S] COG2606 Uncharacterized conserved protein Length = 159 Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 4/156 (2%) Query: 6 TNAMRILDTRKIAYEIHMYDNEDGQIH-GTAVAEKVGLPPETVFKTL-VAHSG--VNLYV 61 T A+++L+ KI+++IH Y+++ + + G V +K+GL P+ V+KTL VA +G +L V Sbjct: 2 TPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAV 61 Query: 62 FVIPVXXXXXXXXXXXXXXXXXXXMLPVKDLLKWTGYVRGGCSPVGMKKLYPTFIDSSAG 121 V PV M + TGY+ GG SP+G KK PT ID+ A Sbjct: 62 AVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGGISPLGQKKRLPTIIDAPAQ 121 Query: 122 ALATMAVSGGKIGLQMELAPEQLAGVINAGFCELIK 157 AT+ VSGGK GL +ELA LA +++A F ++ + Sbjct: 122 EFATIYVSGGKRGLDIELAAGDLAKILDAKFADIAR 157 Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 4/156 (2%) Query: 6 TNAMRILDTRKIAYEIHMYDNEDGQIH-GTAVAEKVGLPPETVFKTL-VAHSG--VNLYV 61 T A+++L+ KI+++IH Y+++ + + G V +K+GL P+ V+KTL VA +G +L V Sbjct: 2 TPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAV 61 Query: 62 FVIPVXXXXXXXXXXXXXXXXXXXMLPVKDLLKWTGYVRGGCSPVGMKKLYPTFIDSSAG 121 V PV M + TGY+ GG SP+G KK PT ID+ A Sbjct: 62 AVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGGISPLGQKKRLPTIIDAPAQ 121 Query: 122 ALATMAVSGGKIGLQMELAPEQLAGVINAGFCELIK 157 AT+ VSGGK GL +ELA LA +++A F ++ + Sbjct: 122 EFATIYVSGGKRGLDIELAAGDLAKILDAKFADIAR 157 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,346,392 Number of extensions: 373102 Number of successful extensions: 1282 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 1270 Number of HSP's successfully gapped: 12 Length of query: 157 Length of database: 38,378,431 Length adjustment: 98 Effective length of query: 59 Effective length of database: 27,075,699 Effective search space: 1597466241 Effective search space used: 1597466241 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 111 (47.4 bits)