BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0502.0031.p
         (207 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

alr1941 [K] COG1309 Transcriptional regulator                          55   6e-08
lin0926 [K] COG1309 Transcriptional regulator                          53   3e-07
CC0732 [K] COG1309 Transcriptional regulator                           53   4e-07
MTH1787 [K] COG1309 Transcriptional regulator                          51   1e-06
Cgl1504 [K] COG1309 Transcriptional regulator                          51   1e-06

>alr1941 [K] COG1309 Transcriptional regulator
          Length = 359

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 2/53 (3%), Positives = 7/53 (13%)

Query: 3  PTKQGSAEKLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLL 55
            +           +   S+                 +            +L 
Sbjct: 9  NRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLE 61


>lin0926 [K] COG1309 Transcriptional regulator
          Length = 218

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 35/45 (77%)

Query: 11 KLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLL 55
          +++ A+I+L +EKGY G +T EIA  AG++E T+FRH+ +K+ LL
Sbjct: 27 RIVAASIELFAEKGYAGTSTNEIAKKAGVAEGTIFRHYKTKKDLL 71


>CC0732 [K] COG1309 Transcriptional regulator
          Length = 215

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 4   TKQGSAEKLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALE--- 60
            KQ + E++L AA  L SE+GY G T ++IA AAG+S   +F  F  K +L E  L    
Sbjct: 24  AKQRTRERVLAAARRLFSERGYEGATIRDIAQAAGMSTGAVFASFADKSELFEEILTADY 83

Query: 61  RFQYAEEIQILFSEKLVWELESDLLSISKKYH 92
              YA+ IQ   + K V E    L  ++  +H
Sbjct: 84  EVIYAQMIQAARTAKTVDEALLGLFGVAYSFH 115


>MTH1787 [K] COG1309 Transcriptional regulator
          Length = 268

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 2/50 (4%), Positives = 7/50 (14%)

Query: 11 KLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALE 60
          +     I            +        +            + +L     
Sbjct: 17 ETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDT 66


>Cgl1504 [K] COG1309 Transcriptional regulator
          Length = 188

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 2   RPTKQGSAEKLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALER 61
           +PT   S +++L  A    +E GY G T + +  A G S   +F HFG K+ L   AL R
Sbjct: 8   KPTN--SRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLF-LALAR 64

Query: 62  FQYAEEIQILFSEKLVWELESDLLSISKKYHEIMNRDRKLIQIALKDEVHI-PGFKESRL 120
              A   +++    LV E+   +L   ++Y      D   +++ +  ++   P F+   +
Sbjct: 65  EDAARMAEVVSENGLV-EVMRGMLEDPERY------DWMSVRLEISKQLRTDPVFRAKWI 117

Query: 121 QHPRQLLTLLTEYFNKMNEKGKVASSNPTMQAFTFMMAQYGAFINDLEAGNNYPGIS 177
            H   L   +    ++  +KG++ +  P     TF+      FI+ L  G +  G+S
Sbjct: 118 DHQSVLDEAVRVRLSRNVDKGQMRTDVPIEVLHTFLETVLDGFISRLATGASTEGLS 174


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,053,985
Number of extensions: 547334
Number of successful extensions: 1390
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1394
Number of HSP's successfully gapped: 10
Length of query: 207
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 105
Effective length of database: 26,614,363
Effective search space: 2794508115
Effective search space used: 2794508115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)