BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0502.0020.p
         (190 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll1509 [G] COG1082 Sugar phosphate isomerases/epimerases             140   2e-33
AGl1007 [G] COG1082 Sugar phosphate isomerases/epimerases             130   9e-31
SMb21596 [G] COG1082 Sugar phosphate isomerases/epimerases            127   1e-29

>mll1509 [G] COG1082 Sugar phosphate isomerases/epimerases
          Length = 301

 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 5/138 (3%), Positives = 23/138 (16%), Gaps = 2/138 (1%)

Query: 8   SLRIGTLVGA--PDAVRVIPQIVKHGFESFSLTFWQTTGATDLAETAARVRELAAEHDFI 65
              I  +       +  +   + +    +             +    A            
Sbjct: 8   CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67

Query: 66  ISSVGIFGNPLTGTGDNADALASWERLIDHAHLFGTDMVSGFTGRLTGQSIDESIPKFAE 125
           +         +     ++         +     +  D          G++         +
Sbjct: 68  MEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVD 127

Query: 126 VFGELSKRAADKGLRIAF 143
              E +          + 
Sbjct: 128 NVQEKADLLPHLQFLASQ 145


>AGl1007 [G] COG1082 Sugar phosphate isomerases/epimerases
          Length = 134

 Score =  130 bits (328), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 0/138 (0%), Positives = 0/138 (0%), Gaps = 2/138 (1%)

Query: 8   SLRIGTLVGAP--DAVRVIPQIVKHGFESFSLTFWQTTGATDLAETAARVRELAAEHDFI 65
            L + T        +      +      +              A    +    A   +  
Sbjct: 7   VLGLITFSSPAFAASCEKNFTVSGVPMVTAVSYKSFQELPKAKAPAVLQKLAQAVAAEGF 66

Query: 66  ISSVGIFGNPLTGTGDNADALASWERLIDHAHLFGTDMVSGFTGRLTGQSIDESIPKFAE 125
                                   + L   A   G  +       +    I +       
Sbjct: 67  SGIQINKALSSIDAHQETSGSGRIQTLRVVARQKGAAVRIDAVFNIQAGQIADKDVIRKG 126

Query: 126 VFGELSKRAADKGLRIAF 143
                             
Sbjct: 127                    144


>SMb21596 [G] COG1082 Sugar phosphate isomerases/epimerases
          Length = 300

 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 92/138 (66%), Gaps = 2/138 (1%)

Query: 8   SLRIGTLVGAP--DAVRVIPQIVKHGFESFSLTFWQTTGATDLAETAARVRELAAEHDFI 65
           S+R+GT+V A   +A + I +I   GFESF   FWQTT   DLAE   R RE   + D  
Sbjct: 7   SIRVGTMVSATKGEAAKRIGEIADLGFESFEPFFWQTTNGQDLAELGKRCREAIGDRDIT 66

Query: 66  ISSVGIFGNPLTGTGDNADALASWERLIDHAHLFGTDMVSGFTGRLTGQSIDESIPKFAE 125
           IS++G+FGNPL  T  +  +L  W+  ID+AH FG   V+GFTGR+  + + +S+P++ +
Sbjct: 67  ISTLGMFGNPLEETDIDLQSLQGWKDCIDNAHHFGATCVAGFTGRIRNRPLTDSLPRYRK 126

Query: 126 VFGELSKRAADKGLRIAF 143
           ++ EL++RAADKG++IAF
Sbjct: 127 IWRELAQRAADKGVKIAF 144


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,262,092
Number of extensions: 525467
Number of successful extensions: 1994
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1994
Number of HSP's successfully gapped: 3
Length of query: 190
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 90
Effective length of database: 26,845,031
Effective search space: 2416052790
Effective search space used: 2416052790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)