BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0019.p (298 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing prot... 115 9e-26 lin2267 [K] COG2207 AraC-type DNA-binding domain-containing prot... 93 6e-19 BS_ydeC [K] COG2207 AraC-type DNA-binding domain-containing prot... 80 4e-15 BH0724 [K] COG2207 AraC-type DNA-binding domain-containing proteins 73 5e-13 lin0157 [K] COG2207 AraC-type DNA-binding domain-containing prot... 67 3e-11 >CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 295 Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 126/257 (49%), Gaps = 6/257 (2%) Query: 42 HWHEHFEIIVMQKGRAIFHVDSRPYEAGPGDVIIVPSGGLHVGYSLINGDIAFVSIVFHA 101 HWHEH +I G A ++ G + I+ S LH S N ++ F +I Sbjct: 36 HWHEHLQIYYFTAGTAYLECAQNKFDVTTGSIAIINSNELHYLESHSN-NLKFYTIRIEP 94 Query: 102 SLFKDRYQDSQHEQFVAPYLNNLYRFPVKPVEQNPVCSTYYPLLESLIQEVRDKSPAFQL 161 + +D +++AP L R K + +N + ++++++E K+ ++L Sbjct: 95 TFLFSNKEDLLQTKYLAPLA--LNRITFKNLIENDL--QILECIKTILKEYSSKNIGYEL 150 Query: 162 VVKNQLHLFFTLLSRTFPPQRMSDRHHRERYSVNRERFKPLLEYLEQHLDEKITIESAAR 221 VK ++ L R + + +++ ER + +F+ + +E+ EK+T+ A Sbjct: 151 AVKANIYQLIVYLLRGYVDKILNENEFEERKRI-LNKFQCVFRLIEEKYTEKLTLNELAD 209 Query: 222 FVNLNPYHFCKTFKKLTGRTFIDYVNLYRVNEAERXXXXXXXXXXXXAGKVGCDNPNYFT 281 VN + +HFC+TFK++TG+T DY+N R+ ++ A K G DN NYF+ Sbjct: 210 CVNFSTHHFCRTFKQMTGKTTTDYINGIRLYKSTNYLKQTDLNITEIAIKCGFDNNNYFS 269 Query: 282 KLYKQYKGLTPSVARKM 298 +L+K++ +TP+ RK+ Sbjct: 270 RLFKKHYDMTPTKYRKL 286 >lin2267 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 292 Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 130/295 (44%), Gaps = 16/295 (5%) Query: 8 ELKEYPQLEEKTYPFRLFFNQCRDAKAEQNILFLHWHEHFEIIVMQKGRAIFHVDSRPYE 67 E E P+L K +PFR F N+ + +++ HWH+ EII KG V+ P + Sbjct: 3 EYLEIPELN-KAFPFRSFVNEG------EVLVYPHWHKEIEIIYALKGSLNLGVNDMPIQ 55 Query: 68 AGPGDVIIVPSGGLHVGYSLINGDIAFVSIVFHASLFKDRYQDSQHEQFVAPYLNNLYRF 127 G++ I+ G +H Y L + + + I F SLF++ Q + L + Sbjct: 56 LNEGEIQIINGGDVH--YFLASPNSERIVIQFDLSLFQEEMQMDGQNGTLREMLTEMAHL 113 Query: 128 PVKPVEQNPVCSTYYPLLESLIQEVRDKSPAFQLVVKNQLHLFFTLLSRTFPPQRMS-DR 186 + E+ + L+ ++ E + SP ++K L L+ R P ++ D Sbjct: 114 SREWPEE--TTAKVQSLIRNIHLESSNDSPGKHYILKADLLAIIGLIYREIPQKKTQPDS 171 Query: 187 HHRERYSVNR----ERFKPLLEYLEQHLDEKITIESAARFVNLNPYHFCKTFKKLTGRTF 242 E+ + ++ + Y+E+H E ++++ A + + Y+F K FK+ TG TF Sbjct: 172 VISEKAVLKSKETLQKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYYFTKFFKRNTGMTF 231 Query: 243 IDYVNLYRVNEAERXXXXXXXXXXXXAGKVGCDNPNYFTKLYKQYKGLTPSVARK 297 + ++N YR+N+A+ A G + F +K+ G+ P RK Sbjct: 232 VTFLNDYRLNKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAPLKYRK 286 >BS_ydeC [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 291 Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/278 (23%), Positives = 124/278 (44%), Gaps = 21/278 (7%) Query: 29 CRDAKAEQNI---LFLHWHEHFEIIVMQKGRAIFHVDSRPYEAGPGDVIIVPSGGLHVGY 85 C QNI + LHWH+ + +++ KG A+F ++ E GD + + SG LH+ Sbjct: 25 CYKTTINQNINGYIPLHWHDEIQFVLILKGIALFQINEEKIEVHEGDGLFINSGYLHMAE 84 Query: 86 SLINGDIAFVSIVF--HASLFKDRYQDSQHEQFVAPYL--NNLYRFPVKPVEQNPVCSTY 141 D ++ + H L ++ Y +V PY+ NL + +Q Sbjct: 85 EKEGSDCTYICLNVSPHFVLSQELYSS-----YVQPYMFSTNLPYLFLAGNQQ--WAKNI 137 Query: 142 YPLLESLIQEVRDKSPAFQLVVKNQLHLFF-TLLSRTFPPQRMSDRHHRERYSVNRERFK 200 ++ + Q ++ K+ +++ + QL L + L+ F + + + + R K Sbjct: 138 LDAVKKINQLIQQKTSLYEIDITMQLTLMWKNLVVNGFQLE------YDQSEMIKSHRMK 191 Query: 201 PLLEYLEQHLDEKITIESAARFVNLNPYHFCKTFKKLTGRTFIDYVNLYRVNEAERXXXX 260 +L ++ H EKIT+E A+ L+ C+ FK++ +T + YV YR+ ++ Sbjct: 192 QMLNWIHLHYVEKITLEDIAKAGQLSRSECCRYFKRMLNKTPLRYVMDYRIQKSLLLLQH 251 Query: 261 XXXXXXXXAGKVGCDNPNYFTKLYKQYKGLTPSVARKM 298 + +VG ++ +YF ++Q +TP +KM Sbjct: 252 PESNVTEVSYQVGFNSTSYFISKFQQAMNMTPLSYKKM 289 >BH0724 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 298 Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/258 (21%), Positives = 117/258 (45%), Gaps = 20/258 (7%) Query: 41 LHWHEHFEIIVMQKGRAIFHVDSRPYEAGPGDVIIVPSGGLHVGYSLINGDIAFVSIVFH 100 LHWH+ + +V+ +G A F V+ GD + + SG LH+ + ++ + Sbjct: 42 LHWHDELQFVVIIQGEARFQVNEEAIIVQEGDGLFINSGCLHMVEDGNGSNCVYICLNVP 101 Query: 101 ASLFKDRYQDSQHEQFVAPYL--NNLYRFPVKPVE---QNPVCSTYYPLLESLIQEVRDK 155 A R + +VAPY+ NL + E QN + +T ++ Q + ++ Sbjct: 102 AQSIISR---ELYTAYVAPYVQATNLPYVLIPSSEMWGQNIIEATL-----NIHQCLEEQ 153 Query: 156 SPAFQLVVKNQLHLFF-TLLSRTFPPQRMSDRHHRERYSVNRERFKPLLEYLEQHLDEKI 214 P +++ + +L + + +L++ FP + + + + +R K +L+++ H E I Sbjct: 154 PPYYEMDITTKLTVIWKSLITNGFPLE------YDQSAMIKNQRMKAMLQWIHLHYGENI 207 Query: 215 TIESAARFVNLNPYHFCKTFKKLTGRTFIDYVNLYRVNEAERXXXXXXXXXXXXAGKVGC 274 ++ A+ L+ C+ FK+ T + YV YR+ ++ A +VG Sbjct: 208 RLDDIAKAGQLSRSECCRYFKRTLKMTPLQYVTDYRIQKSVTLLQQPESNVTDVAYQVGF 267 Query: 275 DNPNYFTKLYKQYKGLTP 292 ++ +YF +++ +TP Sbjct: 268 NSTSYFIDQFRKAMNMTP 285 >lin0157 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 277 Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/259 (22%), Positives = 111/259 (42%), Gaps = 25/259 (9%) Query: 42 HWHEHFEIIVMQKGRAIFHVDSRPYEAGPGDVIIVPSGGLHVGYSLINGDIAFVSIVFHA 101 H H+ EI ++ +G I+ ++ GD++I G H + A + I F Sbjct: 30 HHHDFLEISIICEGNVIYDIEGERVALEKGDMLIFNPGVNHYDITEPGMTNAQLHIGFRN 89 Query: 102 SLFKDRYQDSQHEQFVAPYLNNLYRFPVKPVEQNPVCSTYYPLLESLIQEVRDKSPAFQL 161 + Y N + F + + S + + +I+E + P + L Sbjct: 90 FALEG-------------YSRNTFPFKKAFLRKKEDESAILSISKQIIEEKDAEKPGYDL 136 Query: 162 VVKN-QLHLFFTLLSRTFPPQ------RMSDRHHRERYSVNRERFKPLLEYLEQHLDEKI 214 ++K + L +L P Q ++S +++ VN ++ Y+E+H E + Sbjct: 137 ILKAFVMQLIIHVLREATPEQLENNGVKLSTDEQQKQMLVNE-----IIHYMEKHHTEDV 191 Query: 215 TIESAARFVNLNPYHFCKTFKKLTGRTFIDYVNLYRVNEAERXXXXXXXXXXXXAGKVGC 274 ++ + ++ + ++P + K FK+ TG + I+Y+ R+ AE A VG Sbjct: 192 SLSTLSQTMYISPAYISKVFKEETGESPINYLIKIRLTRAEELLKNKDVTVKQAANMVGY 251 Query: 275 DNPNYFTKLYKQYKGLTPS 293 ++ YF+KL+K+Y G PS Sbjct: 252 NDAYYFSKLFKKYYGFPPS 270 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,746,091 Number of extensions: 904021 Number of successful extensions: 2180 Number of sequences better than 1.0e-05: 28 Number of HSP's gapped: 2188 Number of HSP's successfully gapped: 28 Length of query: 298 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 192 Effective length of database: 26,153,027 Effective search space: 5021381184 Effective search space used: 5021381184 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 115 (48.9 bits)