BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0013.p (285 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1014 [K] COG1609 Transcriptional regulators 108 9e-24 BS_degA [K] COG1609 Transcriptional regulators 107 2e-23 VC1557 [K] COG1609 Transcriptional regulators 103 3e-22 TM1200 [K] COG1609 Transcriptional regulators 97 2e-20 L0143 [K] COG1609 Transcriptional regulators 96 8e-20 >RSc1014 [K] COG1609 Transcriptional regulators Length = 347 Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 115/241 (47%), Gaps = 14/241 (5%) Query: 4 IASRKEVAELAGVSEATVSRVLNNVGPLKEKTKEKVLAAARELGYTPXXXXXXXXXXXXG 63 +A+ K+VA LAGVS TVS V+NN P+ +T+++V A R Y P Sbjct: 1 MATIKDVAALAGVSFTTVSHVINNTRPVNSETRKRVEEAIRATRYVPSAVARSLKHRTTR 60 Query: 64 NLGVIMPYLPKARLFSAYYFSEILSGIGSRAXXXXEEGYDLLMIFRDAD--EPLDYCGLF 121 +GV++P YF+E+ GI GY +++ D D + DY + Sbjct: 61 TIGVLVPTATNP------YFAELARGIEDVCAAA---GYSVILCNSDDDPRKQRDYLRVL 111 Query: 122 RMRKVDACIVXXXXXXXXXXXXXRQLKQEGHPYCLINQHFAGEGFHEVDADHVEGCQLAV 181 ++VD IV L + P ++++ G +V DH EG LA Sbjct: 112 MEKRVDGLIVSSAGPDNALLDA---LGESALPVVMVDRPTEGILADQVQIDHEEGAYLAT 168 Query: 182 KHLLQQGFTRIAFLNGPLAYSNSRDRLEGYMRAFQEAGIPADPSLLFEGNFSRRSGIAAA 241 +HLL+ G RIA ++GP S + RL G+ RA +EAG+P + + EG+F+ G AA Sbjct: 169 RHLLELGHRRIACISGPSTLSVTAGRLAGFHRALREAGVPEHAARVAEGDFTSPGGYRAA 228 Query: 242 Q 242 + Sbjct: 229 R 229 >BS_degA [K] COG1609 Transcriptional regulators Length = 337 Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 11/231 (4%) Query: 9 EVAELAGVSEATVSRVLNNVGPLKEKTKEKVLAAARELGYTPXXXXXXXXXXXXGNLGVI 68 +VA+ AGVS TVSRV+NN G + +KT++KV+ E+ YTP + ++ Sbjct: 7 DVAKAAGVSITTVSRVINNTGRISDKTRQKVMNVMNEMAYTPNVHAAALTGKRTNMIALV 66 Query: 69 MPYLPKARLFSAYYFSEILSGIGSRAXXXXEEGYDLLMIFRDAD--EPLDYCGLFRMRKV 126 P + S ++ E+ I RA E G+ +L+ D D + Y + + +KV Sbjct: 67 APDI------SNPFYGELAKSIEERAD---ELGFQMLICSTDYDPKKETKYFSVLKQKKV 117 Query: 127 DACIVXXXXXXXXXXXXXRQLKQEGHPYCLINQHFAGEGFHEVDADHVEGCQLAVKHLLQ 186 D I ++ E P +I+Q V D V G A KHLL Sbjct: 118 DGIIFATGIESHDSMSALEEIASEQIPIAMISQDKPLLPMDIVVIDDVRGGYEAAKHLLS 177 Query: 187 QGFTRIAFLNGPLAYSNSRDRLEGYMRAFQEAGIPADPSLLFEGNFSRRSG 237 G T IA + G + + ++R++G+ +A +EAG+P D SL+ + FS SG Sbjct: 178 LGHTNIACIIGDGSTTGEKNRIKGFRQAMEEAGVPIDESLIIQTRFSLESG 228 >VC1557 [K] COG1609 Transcriptional regulators Length = 344 Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 113/246 (45%), Gaps = 13/246 (5%) Query: 4 IASRKEVAELAGVSEATVSRVLNNVGPLKEKTKEKVLAAARELGYTPXXXXXXXXXXXXG 63 +A+ +V +LAGVS+ATVSRVLN G +K +T+E VLAA ++LGY P Sbjct: 10 MATINDVCKLAGVSKATVSRVLNETGQVKAQTREAVLAAMQQLGYQPNSLAQALATNTTN 69 Query: 64 NLGVIMPYLPKARLFSAYYFSEILSGIGSRAXXXXEEGYDLLMIFRDADEP--LDYCGLF 121 ++G+++P+ F + YF IL A + G LL++ E + Sbjct: 70 SIGLVLPH------FESSYFGSILFEAEQGA---QKAGKKLLVMNSKNSEQGEKEAVATL 120 Query: 122 RMRKVDACIVXXXXXXXXXXXXXRQLKQEGHPYCLINQHFAGEGFHEVDADHVEGCQLAV 181 ++ DA ++ +Q Q P ++N+ H D + QLA+ Sbjct: 121 AAQRCDAILLYSRHLNEVQLLELQQ--QHPSPLVILNRRLHHPQLHSFGLDQTQIAQLAM 178 Query: 182 KHLLQQGFTRIAFLNGPLAYSNSRDRLEGYMRAFQEAGIPADPSLLFEGNFSRRSGIAAA 241 +HLL G +IA + PL + R + Y +A E GI SL+ EG+ + G A Sbjct: 179 QHLLNLGHRQIACITSPLVSETGKIRYQVYQQALHEQGIELSSSLVIEGDNTLLGGYQAM 238 Query: 242 QAIAPQ 247 Q + Q Sbjct: 239 QQLLQQ 244 >TM1200 [K] COG1609 Transcriptional regulators Length = 333 Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 124/253 (49%), Gaps = 22/253 (8%) Query: 8 KEVAELAGVSEATVSRVLNNVGPLKEKTKEKVLAAARELGYTPXXXXXXXXXXXXGNLGV 67 +++AE AGVS TVSR LNN + E+T+ K+L A+ELGY +GV Sbjct: 9 RDIAEKAGVSINTVSRALNNKPDISEETRRKILKIAQELGYVKNATASSLRSKQTNIVGV 68 Query: 68 IMPYLPKARLFSAYYFSEILSGIGSRAXXXXEEGYDLLM-----IFRDADEPLDYCGLFR 122 I+ +++E+L GI + + GY +++ I+ + ++ ++ + Sbjct: 69 IIADSANP------FYAEVLKGIEAASRKY---GYQIMLMNTERIYENEEKAIE---VLL 116 Query: 123 MRKVDACIVXXXXXXXXXXXXXRQLKQEGHPYCLINQHFAGEGFHEVDADHVEGCQLAVK 182 R+VD ++ + L + P+ ++ +HF E+ +D V+G LA + Sbjct: 117 QRRVDGLLITPVQDRSDDI---KTLIERKVPFVIVGRHFEELEVDEIHSDEVKGGYLATR 173 Query: 183 HLLQQGFTRIAFLNGPLAYSNSRDRLEGYMRAFQEAGIPADPSLLFEGNFSRRSGI-AAA 241 HL+++G I ++G L S + RLEGY +A +E GIP ++ E + SG A Sbjct: 174 HLIERGRKNIIMISGYLFKSAAYMRLEGYRKALKEYGIPFSEKMIIETDIDIESGYRAMR 233 Query: 242 QAIAPQLERIEAV 254 +AI LE EAV Sbjct: 234 EAIEKGLE-FEAV 245 >L0143 [K] COG1609 Transcriptional regulators Length = 332 Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 111/246 (45%), Gaps = 21/246 (8%) Query: 9 EVAELAGVSEATVSRVLNNVGPLKEKTKEKVLAAARELGYTPXXXXXXXXXXXXGNLGVI 68 +VA +AGVS ATVSRV+N +KEKT++KVL A EL Y P +GVI Sbjct: 10 DVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVI 69 Query: 69 MPYLPKARLFSAYYFSEILSGIGSRAXXXXEEGYDLLMIFRDADEPLD----YCGLFRMR 124 +P + ++ YF+ I G+ + Y MI ++D ++ F + Sbjct: 70 LPTI------TSTYFAAITRGVDD-----IDSMYKYNMILANSDNDVEKEEKVLETFLSK 118 Query: 125 KVDACIVXXXXXXXXXXXXXRQLKQEGHPYCLINQHFAGEGFHEVDADHVEGCQLAVKHL 184 +VD + LK P L+ + V+ D+ + K L Sbjct: 119 QVDGIVYMGSSLDEKIRT---SLKNSRTPVVLVGTIDGDKEIPSVNIDYHLAAYQSTKKL 175 Query: 185 LQQGFTRIAFLNGPLAYSNSRDRLEGYMRAFQEAGIPADPSLLFEGNFSRRSGIAAAQAI 244 + G +IA++ G L + +R+ GY A EA I D +L+FEGN+S G A A+ + Sbjct: 176 IDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERL 235 Query: 245 APQLER 250 LER Sbjct: 236 ---LER 238 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,497,714 Number of extensions: 613702 Number of successful extensions: 1317 Number of sequences better than 1.0e-05: 99 Number of HSP's gapped: 1265 Number of HSP's successfully gapped: 102 Length of query: 285 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 180 Effective length of database: 26,268,361 Effective search space: 4728304980 Effective search space used: 4728304980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 115 (48.9 bits)