BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0502.0004.p
         (206 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0538 [K] COG1309 Transcriptional regulator                          55   6e-08
VC1741 [K] COG1309 Transcriptional regulator                           52   8e-07

>RSc0538 [K] COG1309 Transcriptional regulator
          Length = 340

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query: 7  IADHADKDTKQTILEATVDLIRAYGFSCATMRNIAAKAETNLALVNYHYGSKEKLL 62
          +A     DTK  ILEAT  L   +G+   ++R I A+A+ NLA VNYH+GSKE L+
Sbjct: 1  MARPGAGDTKNRILEATELLFIEFGYEAMSLRQITARAKVNLAAVNYHFGSKEALM 56


>VC1741 [K] COG1309 Transcriptional regulator
          Length = 224

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 13 KDTKQTILEATVDLIRAYGFSCATMRNIAAKAETNLALVNYHYGSKEKLLADAVRVLLST 72
            TK+ IL+    L   YGF+  ++R I +KA  NLA VNYH+G K+ L    VR +L+ 
Sbjct: 21 SSTKEKILDVAEGLFAEYGFNDTSLRTITSKAGVNLASVNYHFGDKKTL----VRAVLNR 76

Query: 73 FDDAF 77
          + +AF
Sbjct: 77 YLEAF 81


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,420,860
Number of extensions: 555444
Number of successful extensions: 1051
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 3
Length of query: 206
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 105
Effective length of database: 26,729,697
Effective search space: 2806618185
Effective search space used: 2806618185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)