BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0500.0018.p
         (129 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2322 [K] COG0789 Predicted transcriptional regulators               72   2e-13
CC3082 [K] COG0789 Predicted transcriptional regulators                70   5e-13
PA4778 [K] COG0789 Predicted transcriptional regulators                65   2e-11
AGc1709 [K] COG0789 Predicted transcriptional regulators               65   2e-11
RSc3347 [K] COG0789 Predicted transcriptional regulators               62   2e-10

>RSc2322 [K] COG0789 Predicted transcriptional regulators
          Length = 124

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 5/117 (4%)

Query: 5   MRIGELTERAGVTQRTVRYYESIGLLPSGER--EGNGHHYYTEETVARLRKIDQLKKLGL 62
           MRIGEL +RAGV++ TVRYYE +GLL    +    N +  Y+E ++ R+R I   K LG 
Sbjct: 1   MRIGELCKRAGVSRDTVRYYERMGLLDKATQPHATNTYKRYSELSLQRIRLIIHAKALGF 60

Query: 63  SLEEIGDVIELYFTDPSGVQPKRKVLGLLRRHLADTDKKLDALGQFRDDLQSHIERF 119
           +L EI DVI ++ +    V  K   +  L+  LA+ D+K  AL   R  L + + + 
Sbjct: 61  TLAEINDVIHVWDSPTFAVAQK---VACLQAKLAELDEKSHALTMLRAGLLNALTKV 114


>CC3082 [K] COG0789 Predicted transcriptional regulators
          Length = 118

 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 6/116 (5%)

Query: 5   MRIGELTERAGVTQRTVRYYESIGLLPSGEREGNGHHYYTEETVARLRKIDQLKKLGLSL 64
           M+IGE+ +RAGV+   +R+YE  G+LP+  R  NG+  Y E  +A L  I+Q ++LG SL
Sbjct: 1   MKIGEIAKRAGVSTSRIRFYEEQGILPTAPRGANGYRDYPESLIATLGFIEQAQRLGFSL 60

Query: 65  EEIGDVIELYFTDPSGVQPKRKVLGLLRRHLADTDKKLDALGQFRDDLQSHIERFE 120
           +EI     L      G+  K      LR  LA+ D  + A    R +L + IE  E
Sbjct: 61  KEIAGHAALEGRPCEGLPQK------LRAKLAEVDAHIAAAQARRAELVALIETLE 110


>PA4778 [K] COG0789 Predicted transcriptional regulators
          Length = 132

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 3/116 (2%)

Query: 5   MRIGELTERAGVTQRTVRYYESIGLLPSGEREGNGHHYYTEETVARLRKIDQLKKLGLSL 64
           M IGE  +++G+T + +RYYESI LL    R  +G+ +Y E  +  L  I + + LG SL
Sbjct: 1   MNIGEAAKKSGLTPKMIRYYESIELLRPAGRSASGYRHYNENDLHTLAFIRRSRDLGFSL 60

Query: 65  EEIGDVIELYFTDPSGVQPKRKVLGLLRRHLADTDKKLDALGQFRDDLQSHIERFE 120
           +E+G ++ L+       +    V  L  +H+ + ++K++ L   RD LQ  +E  +
Sbjct: 61  DEVGKLLTLW---QDRQRASADVKALAAQHVRELNRKIEELSTLRDTLQDLVEHCQ 113


>AGc1709 [K] COG0789 Predicted transcriptional regulators
          Length = 189

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 5/98 (5%), Positives = 16/98 (16%), Gaps = 3/98 (3%)

Query: 5   MRIGELTERAGVTQRTVRYYESIGLLPSGEREGNGHHYYTEETVARLRKIDQLKKLGLSL 64
           M+      +            +  +    E                + +  +     + +
Sbjct: 1   MKGSRKLGKEERILWGRVAKTTRPISGRLEDLLAFDDVEEHPLEPSVPQTGKSAFPRMIV 60

Query: 65  EEIGDVIELYFTDPSGVQPKRKVLGLLRRHLADTDKKL 102
           E    +               +        L      L
Sbjct: 61  ETAEALPASP-DKKPKTHQPMEKPVKR--KLTRGRLPL 95


>RSc3347 [K] COG0789 Predicted transcriptional regulators
          Length = 159

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 5   MRIGELTERAGVTQRTVRYYESIGLLPSGEREGNGHHYYTEETVARLRKIDQLKKLGLSL 64
           + IGE    +GV+ + +RYYE IGLLP   R    +  Y    +  LR I + + LG SL
Sbjct: 15  VNIGEAARASGVSAKMIRYYERIGLLPPSPRTEGNYRVYDPRALHVLRFIHRARSLGFSL 74

Query: 65  EEIGDVIELYFTDPSGVQPKRKVLGLLRRHLADTDKKLDALGQFRDDL 112
           EEI  ++ L+       +    V  +  RH+AD D ++  L   RD L
Sbjct: 75  EEIRTLLSLWH---DRARASADVKAITLRHVADLDARIRELQGMRDTL 119


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,395,524
Number of extensions: 450249
Number of successful extensions: 1138
Number of sequences better than 1.0e-05: 68
Number of HSP's gapped: 1154
Number of HSP's successfully gapped: 68
Length of query: 129
Length of database: 38,378,431
Length adjustment: 94
Effective length of query: 35
Effective length of database: 27,537,035
Effective search space: 963796225
Effective search space used: 963796225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)