BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0500.0016.p (263 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1537 [S] COG2013 Uncharacterized conserved protein 318 4e-87 MA4652 [S] COG2013 Uncharacterized conserved protein 258 5e-69 STM0367 [KT] COG1221 Transcriptional regulators containing an AA... 84 2e-16 CAC2738 [S] COG2013 Uncharacterized conserved protein 83 5e-16 VNG1609C [S] COG2013 Uncharacterized conserved protein 75 1e-13 >CAC1537 [S] COG2013 Uncharacterized conserved protein Length = 260 Score = 318 bits (816), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 162/261 (62%), Positives = 191/261 (73%), Gaps = 4/261 (1%) Query: 3 AHEIDYVIMGEEIQCVEVQLDPGESVIAEAGSFMMMDPEISMETIFXXXXXXXXXXXXXX 62 AHEIDY I+G E+Q VEV+LDP ESV+AEAG+ M MD I METIF Sbjct: 2 AHEIDYKIIGSEMQIVEVELDPYESVVAEAGAMMYMDSSIEMETIFGDGSDKGSSGGLVS 61 Query: 63 XXXXX-XXXXTGESLFMTVFTHSGAYGRKSVTFAAPYPGKIIPLDLQQHGGKIICQKDSF 121 TGESLFMT+FT+ G G++ V FAAPYPGKIIP+DL +ICQKD F Sbjct: 62 KLMGAGKRLVTGESLFMTIFTNRGV-GKQKVAFAAPYPGKIIPMDLSSFNNYMICQKDCF 120 Query: 122 LCAAKGVSIGIEFQRKLGAGFFGGEGFIMQKLEGDGLSFVHSGGYIMERTLQPGETIKLD 181 LCAAKGVSIG+EF RK+G G FGGEGF++QKLEGDGL+FVHSGG I++R L P E IK+D Sbjct: 121 LCAAKGVSIGVEFTRKIGVGLFGGEGFMLQKLEGDGLTFVHSGGTIVQRELLPKEVIKVD 180 Query: 182 TGCLVAMTSSVDYNIEFVKGVKTALFGGEGLFFATLRGPGKVWVQSLPFSRMADRILSAA 241 TGCLVA T V+Y+IE VKG+K+A+FGGEGLF ATL+GPG VW+QS+PFSR+A RI S A Sbjct: 181 TGCLVAFTRDVNYDIEMVKGIKSAIFGGEGLFLATLKGPGTVWLQSIPFSRLAGRINSTA 240 Query: 242 GNSGRKEEGSILGGLGNLLDG 262 KEEGSILG +GN DG Sbjct: 241 ATG--KEEGSILGNIGNFFDG 259 >MA4652 [S] COG2013 Uncharacterized conserved protein Length = 263 Score = 258 bits (660), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 131/263 (49%), Positives = 176/263 (66%), Gaps = 8/263 (3%) Query: 3 AHEIDYVIMGEEIQCVEVQLDPGESVIAEAGSFMMMDPEISMETIFXXXXXXXXXXXXXX 62 A +IDY I+G ++Q VE++LDPGE+V AEAG+ M P I M+T Sbjct: 2 ADDIDYEIIGNDMQIVEIELDPGEAVQAEAGAMAYMGPGIQMQT----SMGSEGGGLLGG 57 Query: 63 XXXXXXXXXTGESLFMTVFTHSGAYGRKSVTFAAPYPGKIIPLDLQQHGGKIICQKDSFL 122 TGES F+T F H G+ G+ V FAAPYPGKIIPLDL + GG I+CQKD+FL Sbjct: 58 LKKGLKRALTGESFFITNFIHKGS-GKGHVAFAAPYPGKIIPLDLSKFGGSILCQKDAFL 116 Query: 123 CAAKGVSIGIEFQRKLGAGFFGGEGFIMQKLEGDGLSFVHSGGYIMERTLQPGETIKLDT 182 CAA+GV + + F R++G G FGGEGFI+Q+L G+G +FVH GG ++ + L PGET +DT Sbjct: 117 CAARGVDVEVAFTRRIGTGLFGGEGFILQRLRGNGFAFVHIGGTVVRKDLAPGETYHVDT 176 Query: 183 GCLVAMTSSVDYNIEFVKGVKTALFGGEGLFFATLRGPGKVWVQSLPFSRMADRILSAAG 242 GC+ A T +V+Y+I + K K ALFGGEG+ ATL GPG +++QSLPFSR+ADRI +A+ Sbjct: 177 GCVAAFTETVNYDITWSKDFKNALFGGEGIVLATLTGPGTIYMQSLPFSRLADRIYAASA 236 Query: 243 NSGRKEEGSILGG---LGNLLDG 262 + + E + +GG LG L+ G Sbjct: 237 SHQNRGEQTGIGGSDILGGLIGG 259 >STM0367 [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain Length = 541 Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 15/231 (6%), Positives = 40/231 (17%), Gaps = 19/231 (8%) Query: 9 VIMGEEIQCVEVQLDPGESVIAEAGSFMMMDPEISMETIFXXXXXXXXXXXXXXXXXXXX 68 + V + + E + ++ + Sbjct: 5 HSAPRDNSDKPVIWTVSVTRLFELFRDISLEFDHLATI----------TPIQLGFEKAVT 54 Query: 69 XXXTGESLFMTVFTHSGAYGRKSVTFAAPYPGKIIPLDLQQHGGKIICQKDSFLCAAKGV 128 + + + + L + Sbjct: 55 YIRKKLATERCDAI---IAAGSNGAYLKSRLSIPVILIKPSG---FDVLQALAKAGKLTS 108 Query: 129 SIGIEFQRKLGAGFFGGEGFIMQKLEGDGLSFVHSGGYIMERTLQPGETIKLDTGCLVAM 188 SIGI ++ L + S+V + I+ G + Sbjct: 109 SIGIVTYQE--TIPALLAFQKTFHLRLEQRSYVTEEDARGQINELKANGIEAVVGAGLIT 166 Query: 189 TSSVDYNIEFVKGVKTALFGGEGLFFATLRGPGKVWVQSLPFSRMADRILS 239 + + + + A A + S + Sbjct: 167 DLAEEAGMTAIFIYSAATVRQAFH-DALDMTRLTRRQRVDYPSGKGLQTRY 216 >CAC2738 [S] COG2013 Uncharacterized conserved protein Length = 218 Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 20/228 (8%) Query: 7 DY-VIMGEEIQCVEVQLDPGESVIAEAGSFMMMDPEISMETIFXXXXXXXXXXXXXXXXX 65 DY ++ G+ + ++V+ G+ VI EAG+ M+P +++ Sbjct: 4 DYEMLYGDTNRLLKVKAQAGDKVIIEAGAMAAMNPNFEIKS------------KAGSVGK 51 Query: 66 XXXXXXTGESLFMTVFTHSGAYGRKSVTFAAPYPGKIIPLDLQQHGGKIICQKDSFLCAA 125 +G S F+ + + +YG + A Y G I +++ K K SFL + Sbjct: 52 AIGRLFSGTSAFLQEYV-AKSYGE--ILVAPKYLGDIKAVNMDGSV-KYRLGKASFLAST 107 Query: 126 KGVSIGIEFQRKLGAGFFGGEGFIMQKLEGDGLSFVHSGGYIMERTLQPGETIKLDTGCL 185 +++ I + G GF GEGFI + EG G+ F+ + G I E TL GE +DT L Sbjct: 108 DKINLNI--KSGGGKGFLSGEGFIQIEAEGSGILFLSAYGAIHEITLSQGEKYIVDTNHL 165 Query: 186 VAMTSSVDYNIEFVKGVKTALFGGEGLFFATLRGPGKVWVQSLPFSRM 233 V SS++Y +E + G+ ++ GGEGL GPGK+ +QS S+M Sbjct: 166 VLWESSMNYKVELLNGLFGSITGGEGL-VCVFEGPGKMLIQSRDPSKM 212 >VNG1609C [S] COG2013 Uncharacterized conserved protein Length = 235 Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 85/208 (40%), Gaps = 17/208 (8%) Query: 20 VQLDPGESVIAEAGSFMMMDPEISMETIFXXXXXXXXXXXXXXXXXXXXXXXTGESLFMT 79 V LDPGES++AE G+ + +S++T GES F Sbjct: 16 VDLDPGESILAEPGAMVSHSAGVSIDT----------STTRDGLLSSAKSMLGGESAFAN 65 Query: 80 VFTHSGAYGRKSVTFAAPYPGKIIPLDLQQHGGKIICQKDSFLCAAKGVSIGIEFQRKLG 139 F GR VT A P PG I DL G + +FL + + + EF Sbjct: 66 EFAADHEAGR--VTLAPPKPGDIAQHDLD--GETLYAVDGAFLASDPSLDVASEFGGL-- 119 Query: 140 AGFFGGEGFIMQKLEGDGLSFVHSGGYIMERTLQPGETIKLDTGCLVAMTSSVDYNIEFV 199 G L G G F+ + G I L PGE+ +D +VA SVD++ V Sbjct: 120 KSLLAGASITPLALSGTGTVFLEAFGGIERVDLDPGESYVVDNEHVVAWEESVDFDARRV 179 Query: 200 KGVKTALFGGEGLFFATLRGPGKVWVQS 227 G+K+ L GEGL G G VW Q+ Sbjct: 180 GGLKSTLLSGEGLVM-EFTGGGSVWYQT 206 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.140 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,304,488 Number of extensions: 700274 Number of successful extensions: 1188 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 1173 Number of HSP's successfully gapped: 9 Length of query: 263 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 159 Effective length of database: 26,383,695 Effective search space: 4195007505 Effective search space used: 4195007505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)