BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0498.0011.p (510 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic ... 129 2e-29 BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic... 120 6e-27 BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic... 100 1e-20 SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 91 7e-18 BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic ... 89 2e-17 >BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 512 Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 114/389 (29%), Positives = 190/389 (48%), Gaps = 26/389 (6%) Query: 45 PVDIEAAEISWGTSLPADDFIKKALDEQVGVNLKLTLVGDQNDYENQMNVRAASGNLPDL 104 P+D++ I + P D IK+ ++E NL L V D E+++N ASGNLP + Sbjct: 51 PLDLDWMVILYHQQPPKDTVIKE-IEELTNTNLDLIWVPDAVK-EDRVNAALASGNLPKV 108 Query: 105 --LMATSKAHLQKLAQSGSLLDLTPYLDKLPEYTKFVGDEVLKKGILDSKQYALPKTGQS 162 L + + +SG ++ PYLD+ P ++ + + +L+ +D K Y + + Sbjct: 109 ITLQDFRTSSVLNAFRSGQFWEIGPYLDEFPNLSE-MNETILENVSVDGKIYGIYRERPL 167 Query: 163 VSYTYWIRKDWLDNLQLQPPATVDELLEVAKAFTTNDPDKNGKNDTFGLTGTNFQTFDPI 222 IR+DWL+NL L+ P ++EL EVA+AFT +DP+ +G +DT G T N D I Sbjct: 168 SRQGVVIRQDWLENLGLEMPTNLEELYEVARAFTYDDPNGSGADDTVGFTDRN----DLI 223 Query: 223 FGAYG-LTNIFDTSQL--FVRDGKVVSTFYQPEMKEALTTIKGFLDAGVVDPEIVSNKGT 279 FGA+ L + T F +GK++ F E E + +K D G+++ E Sbjct: 224 FGAFKTLASYHGTPNEWGFDDEGKLMPEFMTDEYVETMNYMKSLYDEGLINTEFPVTSKE 283 Query: 280 MAIDKAFQGKVGII--NTEWAQIMKDDKVAVWKGANPKAEWIQLAPPKGPTGIANANSLN 337 + G+ GI N A+ ++D K NP+ E GP G + Sbjct: 284 QQQELFMTGRAGIYVGNMVDARNLRDKA----KDINPEMEVAITNRIAGPDGEDRVWAQ- 338 Query: 338 IGASSGLWVIPK-KLESEPEKLNKVLELLNYVSTKEGNRLVQYGVENTHY-TLEGDTVKI 395 G +G++ IPK +E+E E L ++L + ++ ++ L+ YG+E+ HY T++G+ + Sbjct: 339 -GGHNGIFAIPKSSVETEAE-LKRILAFFDRIAEEDVYNLMAYGIEDVHYETIDGEYFER 396 Query: 396 TDKGRSD--ASFTWLYQFTGRPETDYLKS 422 ++ D A L R E +YLK+ Sbjct: 397 IEENLDDWAAEVQPLVSLVAR-EMNYLKA 424 >BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 502 Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 110/406 (27%), Positives = 180/406 (44%), Gaps = 50/406 (12%) Query: 1 MRKKNRVMAWTALAMTVALFSGWGGGSNTPKTAEGDASAKSAAGPVDIEAAEISWGTSLP 60 MRKK W AL + + +G S T +A G P+ + SL Sbjct: 5 MRKK-----WMALPLAAMMIAGCSH-SETSNSASGSKDTIKIMAPLLSPESPSDKSPSL- 57 Query: 61 ADDFIKKALDEQVGVNLKLTLVGDQNDYENQMNVRAASGNLPDLLMATSK-AHLQKLAQS 119 KAL++ G +K+T V D + Y ++ N+ ASG +P ++ K A K ++ Sbjct: 58 ------KALEKYTGKEIKVTWVPDSS-YNDKFNIVMASGEMPHAIVIKDKSAGFIKSVKA 110 Query: 120 GSLLDLTPYLDKLPEYTKFVGDEVLKKGILDSKQYALPKTGQSVSYTYWIRKDWLDNLQL 179 G+ +L+PYL ++ +++LK ++ + Y + +T + IR DWL N+ L Sbjct: 111 GAFWELSPYLKDYKNLSQ-ADEKILKNSSVNGEVYGIYRTRDLIRACMIIRTDWLKNVGL 169 Query: 180 QPPATVDELLEVAKAFTTNDPDKNGKNDTFGLT---------GTNFQTFDPIFGA---YG 227 P T+D+ EV KAF DPD NGK+DT+G+ G+ + FGA YG Sbjct: 170 DMPETLDDFYEVLKAFKEKDPDGNGKDDTYGMVVPKWMGLGNGSPWDVLQIWFGAPNRYG 229 Query: 228 LTNIFDTSQLFVRDGKVVSTFYQPEMKEALTTIKGFLDAGVVDPEIVSNKGTMAIDKAFQ 287 + N GK++ F E +ALT K D G+++ + D + Sbjct: 230 VEN-----------GKLIPDFTTKEYMDALTFFKKLYDEGLINKDFAVMDSAKWNDPVVK 278 Query: 288 GKVGII---NTEWAQIMKDDKVAVWKGANPKAEWIQLAPP-KGPTGIANANSLNIGASSG 343 GK G+I + +QI + A+ + + I + +GP G + SG Sbjct: 279 GKAGVIVDTGSRASQI----QSAMEEADESNKDIIDIVGSLEGPNG---KRTFPTSGYSG 331 Query: 344 LWVIPKKLESEPEKLNKVLELLNYVSTKEGNRLVQYGVENTHYTLE 389 + IPK ++L +VL L+ ++ KE L GV+ +Y L+ Sbjct: 332 MITIPKSSVKTEKELKEVLSFLDKMNDKEAQILTNNGVKGRNYELK 377 >BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 440 Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 106/384 (27%), Positives = 176/384 (45%), Gaps = 31/384 (8%) Query: 13 LAMTVALFSGWGGGSNTPKTAEGDASAKSAAGPVDIEAAEISWGTSL----PADDFIKKA 68 + + +AL G T ++ SA+ AGP ++SW L P D K Sbjct: 1 MCLVLALGGVLAGCKGTDQS-----SAEGKAGPD--SKVKLSWMAILYHQQPPKDRAIKE 53 Query: 69 LDEQVGVNLKLTLVGDQNDYENQMNVRAASGNLPDL--LMATSKAHLQKLAQSGSLLDLT 126 +++ L +T V D E+++N A+GNLP + + + + +SG ++ Sbjct: 54 IEKLTNTELDITWVPDAVK-EDRLNAALAAGNLPQIVTIQDIKNSSVMNAFRSGMFWEIG 112 Query: 127 PYLDKLPEYTKFVGDEVLKKGI-LDSKQYALPKTGQSVSYTYWIRKDWLDNLQLQPPATV 185 Y+ P K ++++ K + +D K Y + + IRKDWLDNL L+ P T+ Sbjct: 113 DYIKDYPNLNKM--NKLINKNVTIDGKLYGIYRERPLSRQGIVIRKDWLDNLNLKTPKTL 170 Query: 186 DELLEVAKAFTTNDPDKNGKNDTFGLTGTNFQTFDPIFGAYGLTNIFDTSQLFVRD--GK 243 DEL EVAKAFT +DPDK+GK+DTFGL N D I+GA+ ++ ++ GK Sbjct: 171 DELYEVAKAFTEDDPDKDGKDDTFGLADRN----DLIYGAFKTIGSYEGMPTDWKESGGK 226 Query: 244 VVSTFYQPEMKEALTTIKGFLDAGVVDPEIVSNKGTMAIDKAFQGKVGIINTEWAQIMKD 303 F E K+ + +K D G ++ + T + QGK GI Sbjct: 227 FTPDFMTQEYKDTMNYMKKLRDNGYMNKDFPVTSKTQQQELFSQGKAGIYIGNMV----- 281 Query: 304 DKVAVWKGANPKAEWIQLAPP-KGPTGIANANSLNIGASSGLWVIPKKLESEPEKLNKVL 362 D V + A+ K+ +++ KGP G G +G++ PK +L ++L Sbjct: 282 DAVNLRDHASDKSMKLEIINRIKGPDG--KERVWASGGHNGVFAFPKTSVKTEAELKRIL 339 Query: 363 ELLNYVSTKEGNRLVQYGVENTHY 386 + ++ ++ L+ YG++ HY Sbjct: 340 AFFDRIAEEDVYSLMTYGIDGVHY 363 >SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 538 Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 138/296 (46%), Gaps = 30/296 (10%) Query: 60 PADDFIKKALDEQVGVNLKLTLVGDQNDYENQMNVRAASGNLPDLLM--ATSKAHLQKLA 117 P + I + L+++ GV++ T Q+D+ + N+ +SG+LPD + S L A Sbjct: 63 PNEKLILQRLEKETGVHIDWTNY--QSDFAEKRNLDISSGDLPDAIHNDGASDVDLMNWA 120 Query: 118 QSGSLLDLTPYLDK-LPEYTKFVGDEVLKKGIL---DSKQYALP---------KTGQSVS 164 + G ++ + +DK +P K + ++ K ++ D Y+ P ++ SV+ Sbjct: 121 KKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFPWIEELGDGKESIHSVN 180 Query: 165 YTYWIRKDWLDNLQLQPPATVDELLEVAKAFTTNDPDKNGKNDTFG---LTGTNFQTFDP 221 WI KDWL L L+ P T D+L++V +AF DP+ NG+ D ++G + F Sbjct: 181 DMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNGNGEADEIPFSFISGNGNEDFKF 240 Query: 222 IFGAYGLTNIFDTSQLFVRDGKVVSTFYQPEMKEALTTIKGFLDAGVVDPEIVSNKGTMA 281 +F A+G+ + D + DGKV T KE + I+ + G++D E + Sbjct: 241 LFAAFGIGD-NDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEKGLIDKEAFEHDWNSY 299 Query: 282 IDKAFQGKVGIINTEWAQIMKDDKVAVWKGANPKAEWIQ-LAPPKGPTGIANANSL 336 I K K G+ T W DK V G+N + + LA P G +A N + Sbjct: 300 IAKGHDQKFGVYFT-W------DKNNV-TGSNESYDVLPVLAGPSGQKHVARTNGM 347 >BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 550 Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 116/489 (23%), Positives = 191/489 (39%), Gaps = 90/489 (18%) Query: 62 DDFIKKALDEQVGVNLKLTLVGDQND--YENQMNVRAASGN-LPDLLMATSKAHLQKLAQ 118 D+ + + +E++G+ +T ND + Q+ + +SG LPD+ A L Sbjct: 63 DNVVTRWAEEELGIKF-VTEWTQPNDEQFNTQLRLMMSSGEKLPDVFQVNDTAIKADLLS 121 Query: 119 SGSLLDL--------TPYLDKLPEYTKFVGDEVLKKGILDSKQYALPK--TGQSVSYTYW 168 SG ++ + +P L +L + +F + D +Y +P+ G W Sbjct: 122 SGLVMPVDEAIETYASPRLKQL--FEQF--PQAFYPSTKDGVRYGIPRFSGGNGSDTLLW 177 Query: 169 IRKDWLDNLQLQPPATVDELLEVAKAFTTNDPDKNGKNDTFGLT---------GTNFQTF 219 IR+DWLD L+PP T++EL + F DP++ GKNDT G+T G N Sbjct: 178 IRQDWLDKFDLEPPTTLEELEHIMDVFVNEDPNETGKNDTIGITFAAGDYGFRGGNIADS 237 Query: 220 DPIFGAYGLTNIFDTSQLFVRDGKVVSTFYQPEMKEALTTIKGFLDAGVVDPEIVSNKGT 279 +FGA+G + + DG +V QP MK+ L I + + G + + Sbjct: 238 SWVFGAFG--DFVPGAWSKGDDGSLVYGSIQPSMKDGLAKIHEWYEKGYLATDFAILSAG 295 Query: 280 MAIDKAFQGKVGIINTEWAQIMKDDKVAVWKGANPKAEWIQLAPP---------KGPTGI 330 A + G+ GI+ W P E Q+ P GP G Sbjct: 296 DAQESFISGRSGIM-----------AAPPWAHGYPIGEMAQVVPDAIVKPFPHVSGPNG- 343 Query: 331 ANANSLNIGASSGLWVIPKKLESEPEKLNKVLELLN--YVSTKEGNRLVQYGV-ENTHYT 387 A G G ++ K E ++K E + Y T + +YG+ E Y Sbjct: 344 -QAGRRGEGYVVGSFLFNKDF----EHMDKFFEYWDAIYGYTFGESDYFEYGLFEGYDYV 398 Query: 388 LE-GDTV------------KITDKGR----------SDASFTWLYQF--TGR-PETDY-- 419 +E G+ V ++ D GR ++ L +F TGR PET Y Sbjct: 399 MEDGEPVYDHAQFEEITGEEVVDPGRYFLPTNVPTIPFEMYSLLEEFHETGREPETGYEA 458 Query: 420 ----LKSKFSNLAAYIDFEANLPRIQTLDGFVTSPPGYNPADANRFIEEEMIKFVYGKAK 475 + AA ++ + +L I +G T R +E + +YG Sbjct: 459 GLAGRDPDYIEAAAIVNRQNDLRIINEFNGPPTPTMVSRSEHLERMEDELFVDIIYGNKP 518 Query: 476 IDSYSKFLE 484 +D++ +F+E Sbjct: 519 LDAFDQFVE 527 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.132 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 39,916,218 Number of extensions: 1671537 Number of successful extensions: 4080 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 4068 Number of HSP's successfully gapped: 6 Length of query: 510 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 399 Effective length of database: 25,576,357 Effective search space: 10204966443 Effective search space used: 10204966443 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)