BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0498.0010.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 263 2e-70 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 256 4e-68 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 255 5e-68 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 214 2e-55 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 208 8e-54 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 128/293 (43%), Positives = 190/293 (64%), Gaps = 7/293 (2%) Query: 4 RNMVNAKSDKLFNTXXXXXXXXXXXXXIFPLLYVISMSLTPYSEVIKNGGFVVIPRSISF 63 M N K+ ++F+ I P LY+I+ S +E+ + F + P++ + Sbjct: 5 HTMHNTKAGRVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRS-FFIFPKTFTL 63 Query: 64 EAYQRILADPALGRSMLVTVFVTVTGTAINMILTTMAAYPLSRRNLRGRTFFLLFIVITM 123 +AY+ + + P RSM V++F+TV GTA+ + T AYPL++R+++GR L ++ +M Sbjct: 64 DAYKYVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSM 123 Query: 124 LFNGGLIPTYLVVRSLGMLDTLWSLIIPGAIATFNVLIMKSFFENLPEELFESAKIDGAK 183 LF+GG+IPTYLVV+SLG+LDT W+LI+P AI FN++I+K+FF+ LP EL ESAKIDG Sbjct: 124 LFSGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCS 183 Query: 184 EFRILWQIVIPLSIPSIMTVGLFYMVGHWNSFFSAILYITDVKLHPLQVVIRNMLLL--- 240 E + W+I +PLS P I T LFY VG WN FF A+LYI D PLQ+V+R + +L Sbjct: 184 EIGVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSDL 243 Query: 241 --TQSNELQAEVTVPTAAMQMAAVIAGSLPIIVVYPFIQKHFTKGMLLGAIKG 291 T + +Q V P +++A ++ +LPI+ VYPF+QKHF KGML+G++KG Sbjct: 244 TATNGDTMQNAVP-PEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVKG 295 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 256 bits (653), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 122/285 (42%), Positives = 196/285 (68%), Gaps = 6/285 (2%) Query: 12 DKLFNTXXXXXXXXXXXXXIFPLLYVISMSLTPYSEVIKNGGFVVIPRSISFEAYQRILA 71 ++LF+ + P ++VI+ S EV+ F++IP + S +AY+ I + Sbjct: 3 NRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKK-FILIPTTFSLDAYRYIFS 61 Query: 72 DPALGRSMLVTVFVTVTGTAINMILTTMAAYPLSRRNLRGRTFFLLFIVITMLFNGGLIP 131 + +S+LV+VFVTV GTA++M L+++ AY LSRR+L GR + +V TMLF+GG+IP Sbjct: 62 TDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIP 121 Query: 132 TYLVVRSLGMLDTLWSLIIPGAIATFNVLIMKSFFENLPEELFESAKIDGAKEFRILWQI 191 T+LVV+SLG+LD+ W+LI+P AI FN++I+K+FF+N+P L ESAKIDG + I ++I Sbjct: 122 TFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKI 181 Query: 192 VIPLSIPSIMTVGLFYMVGHWNSFFSAILYITDVKLHPLQVVIRNMLLLTQS-----NEL 246 V+PLS+P+I T+ LFY V +WN++ +AILY+ D P+QV++R +++++ +E+ Sbjct: 182 VLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSEM 241 Query: 247 QAEVTVPTAAMQMAAVIAGSLPIIVVYPFIQKHFTKGMLLGAIKG 291 + P ++MA ++ ++P+++VYPFIQKHF KG LLG++KG Sbjct: 242 GSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 255 bits (652), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 125/296 (42%), Positives = 198/296 (66%), Gaps = 13/296 (4%) Query: 6 MVNAKS--DKLFNTXXXXXXXXXXXXXIFPLLYVISMSLTPYSEVIKNGGFVVIPRSISF 63 MV+ +S ++FN P +++++ S EV++ F++ P + S Sbjct: 1 MVHDQSLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKR-FILFPTTFSL 59 Query: 64 EAYQRILADPALGRSMLVTVFVTVTGTAINMILTTMAAYPLSRRNLRGRTFFLLFIVITM 123 +AY+ I + + RS+++++ VTV GT +M LT++ AY LSR++L GR + +V TM Sbjct: 60 DAYRYIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTM 119 Query: 124 LFNGGLIPTYLVVRSLGMLDTLWSLIIPGAIATFNVLIMKSFFENLPEELFESAKIDGAK 183 LF+GG+IPT+LVVRSLG+LDT W+LIIP AI FN++I+K+FF+N+PE L ESAKIDG Sbjct: 120 LFSGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCN 179 Query: 184 EFRILWQIVIPLSIPSIMTVGLFYMVGHWNSFFSAILYITDVKLHPLQVVIRNMLLLTQS 243 + I ++IV PLS+P+I T+ LFY V +WN+F AILY+ D + P+QV++R ++++ S Sbjct: 180 DVGIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIM--S 237 Query: 244 NELQAEVTV--------PTAAMQMAAVIAGSLPIIVVYPFIQKHFTKGMLLGAIKG 291 + +Q ++T P ++MA ++ ++P+++VYPFIQKHF KG LLG++KG Sbjct: 238 SGMQGDLTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVKG 293 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 103/268 (38%), Positives = 177/268 (66%), Gaps = 8/268 (2%) Query: 31 IFPLLYVISMSLTPYSEVIKNGGFVVIPRSISFEAYQRILADPALGRSMLVTVFVTVTGT 90 + PLLY++ S +V+ + G P + E YQR+ +D ++ R + ++ + Sbjct: 39 LLPLLYIVVASFMD-PKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINSLLYSFGFA 97 Query: 91 AINMILTTMAAYPLSRRNLRGRTFFLLFIVITMLFNGGLIPTYLVVRSLGMLDTLWSLII 150 A+ ++L+ AYPLS+++L GR + F+++TM F GGL+PTYL+V+ LGML+T W++I+ Sbjct: 98 ALTVLLSVFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIV 157 Query: 151 PGAIATFNVLIMKSFFENLPEELFESAKIDGAKEFRILWQIVIPLSIPSIMTVGLFYMVG 210 PGA+ +N+++ +++F+ LPEEL E+A IDGA + +I ++I++PL+ P + + L+ VG Sbjct: 158 PGAVNVWNIILARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVG 217 Query: 211 HWNSFFSAILYITDVKLHPLQVVIRNMLLLTQSNE----LQA---EVTVPTAAMQMAAVI 263 WNS+F A++YI D L PLQ+V+R +L+ +Q + QA E+ ++ A ++ Sbjct: 218 QWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQPGQDMIGAQAAMNEMKRLAELIKYATIV 277 Query: 264 AGSLPIIVVYPFIQKHFTKGMLLGAIKG 291 SLP+IV+YPF QK+F KG++ G++KG Sbjct: 278 ISSLPLIVMYPFFQKYFDKGIMAGSLKG 305 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 208 bits (530), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 111/287 (38%), Positives = 177/287 (61%), Gaps = 7/287 (2%) Query: 10 KSDKLFNTXXXXXXXXXXXXXIFPLLYVISMSLTPYSEVIKNGGFVVIPRSISFEAYQRI 69 K K+F I PL+++ ++SL+ N + +P + +AY+R Sbjct: 7 KGYKVFTAFNYTFLLLFAVLCILPLVHIFAVSLSGSGAAAANL-VMFLPVDFTLDAYERT 65 Query: 70 LADPALGRSMLVTVFVTVTGTAINMILTTMAAYPLSR--RNLRGRTFFLLFIVITMLFNG 127 +A+ RS L++V V GT I+M AAY LS+ R+ +GR F++ F VITMLFNG Sbjct: 66 IANDNFIRSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNG 125 Query: 128 GLIPTYLVVRSLGMLDTLWSLIIPGAIATFNVLIMKSFFEN-LPEELFESAKIDGAKEFR 186 GL+PTY+VV LG+ +T+W+L++P AI FN++++ +FF +P+ L ESA IDGA F+ Sbjct: 126 GLVPTYMVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQ 185 Query: 187 ILWQIVIPLSIPSIMTVGLFYMVGHWNSFFSAILYITDVKLHPLQVVIRNMLL---LTQS 243 I +I +P+S+P+I TV LF MV HWNS+F ++Y D + +PLQ ++ +++ +Q Sbjct: 186 IFLKIYLPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTIVVQQDFSQI 245 Query: 244 NELQAEVTVPTAAMQMAAVIAGSLPIIVVYPFIQKHFTKGMLLGAIK 290 + + + +Q A + +LP+++VYPFIQK+F KG++LGA K Sbjct: 246 TDAETLRNLSQRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEK 292 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.142 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,016,300 Number of extensions: 626854 Number of successful extensions: 3634 Number of sequences better than 1.0e-05: 161 Number of HSP's gapped: 3420 Number of HSP's successfully gapped: 161 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)