BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0498.0009.p (318 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 258 7e-69 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 245 7e-65 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 239 4e-63 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 238 1e-62 SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 214 2e-55 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 258 bits (660), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 131/297 (44%), Positives = 198/297 (66%), Gaps = 2/297 (0%) Query: 18 RQAWIRIWGMRALYLMLLPCLIWYFVFKYLPMYGVIISFKDYSFTDGILHSPWADPWYKY 77 +Q RI+ + LYLM+LP L+++ +FKY+PM+G+II+F+DY G+ S W +K+ Sbjct: 26 QQKLKRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVG--FKH 83 Query: 78 FKMFFDSPYFLQLMSNTLLISLYKLVFGMLPSIILAILFHECRVMWLKRWVQTLSYMPHF 137 F+ F P F QL+ NTL++ LY L+F IILA+L +E R+M KR+VQT+ Y+PHF Sbjct: 84 FERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHF 143 Query: 138 LSWIIIYGISVAFFSETTGLVNRWITEAGGSSISFLGSTEWFRSMLVSTEIWKDIGWGAI 197 +SW+I+ ++ F+ G++N I G +++FL S +WFR + + IW++ GW I Sbjct: 144 MSWVIVVSLTYVLFTTDGGVINEIIYSITGKNVNFLMSEDWFRPLYILQVIWREAGWATI 203 Query: 198 VYLAAISGIDPTLFEAARVDGASRLRMIWHITLPGIRNVXXXXXXXXXGSIMDAGFEQIY 257 +Y AAI+ IDP+L+EAA++DGA+R R IWHITLP IR+V G I++ GFE ++ Sbjct: 204 IYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVF 263 Query: 258 VFYNPRVYEVGDIIDTWVYRTGLEQMNFSLATTVGLFKSAIGFVLVLGANKLAKRWG 314 + N EV +I DT+VY GL++ FS +T VG FKS +G ++V+ AN LAK++G Sbjct: 264 LMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFG 320 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 245 bits (626), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 131/317 (41%), Positives = 202/317 (63%), Gaps = 9/317 (2%) Query: 3 ESIGMTRN-KTAESPLRQAWIRIWGMR---ALYLMLLPCLIWYFVFKYLPMYGVIISFKD 58 ES +T N KT E L++ + W R L+++L+P L+ +F+Y PM+G++++F+D Sbjct: 2 ESQAVTSNAKTVERKLKK---QKWNFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQD 58 Query: 59 YSFTDGILHSPWADPWYKYFKMFFDSPYFLQLMSNTLLISLYKLVFGMLPSIILAILFHE 118 Y G S W ++F F+ Y Q++ NTL+IS+ K++FG++ II+A+L +E Sbjct: 59 YKPWLGFTGSEWVG--LQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNE 116 Query: 119 CRVMWLKRWVQTLSYMPHFLSWIIIYGISVAFFSETTGLVNRWITEAGGSSISFLGSTEW 178 M +KR VQT+ Y+P+FLSW+I+ GI + S G+VN+ + G I FLGS +W Sbjct: 117 MYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFGIDPIFFLGSNDW 176 Query: 179 FRSMLVSTEIWKDIGWGAIVYLAAISGIDPTLFEAARVDGASRLRMIWHITLPGIRNVXX 238 FR+ +V +++WK+ G+ IV+LAAI+ ++P L+EAA VDGA+R + HITLP + + Sbjct: 177 FRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIII 236 Query: 239 XXXXXXXGSIMDAGFEQIYVFYNPRVYEVGDIIDTWVYRTGLEQMNFSLATTVGLFKSAI 298 G+I++AGF+QI+ YNP VY+ GDIIDT+VYR L +FS T VGLFKS I Sbjct: 237 VVATLSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLI 296 Query: 299 GFVLVLGANKLAKRWGG 315 VL++ +LA ++ Sbjct: 297 SLVLIIIGYRLAYKYAN 313 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 123/274 (44%), Positives = 175/274 (63%), Gaps = 2/274 (0%) Query: 40 WYFVFKYLPMYGVIISFKDYSFTDGILHSPWADPWYKYFKMFFDSPYFLQLMSNTLLISL 99 ++ +FKYLPM+GV+I+FKDYS G S W + YFK FF +P F +L+ NTL+++ Sbjct: 41 YFLIFKYLPMWGVLIAFKDYSPYLGFWKSEWVG--FDYFKDFFMNPDFFRLLRNTLMLAS 98 Query: 100 YKLVFGMLPSIILAILFHECRVMWLKRWVQTLSYMPHFLSWIIIYGISVAFFSETTGLVN 159 L+F +ILA+L +E R KR +QT Y+PHF+SW I+ I+ FF+ TG++N Sbjct: 99 LDLLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVIN 158 Query: 160 RWITEAGGSSISFLGSTEWFRSMLVSTEIWKDIGWGAIVYLAAISGIDPTLFEAARVDGA 219 + I G ISFL +WFR M+V IWK+ GWG I++LAA++ +D +EAA +DGA Sbjct: 159 KLIMSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGA 218 Query: 220 SRLRMIWHITLPGIRNVXXXXXXXXXGSIMDAGFEQIYVFYNPRVYEVGDIIDTWVYRTG 279 R R +WHITLP IR+ GS ++ GFEQ+Y+ N V DI DT+VY G Sbjct: 219 GRFRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMG 278 Query: 280 LEQMNFSLATTVGLFKSAIGFVLVLGANKLAKRW 313 + Q +S +T VGLFKS +G +L+ GAN +AK++ Sbjct: 279 ITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKF 312 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 122/294 (41%), Positives = 183/294 (62%), Gaps = 4/294 (1%) Query: 23 RIWGMRALYLMLLPCLIWYFVFKYLPMYGVIISFKDYSFTDGILHSPWADPWYKYFKMFF 82 + + +AL LM LP LIW +F+Y+P+YG I+F+D+ I WA +K+F F Sbjct: 41 KCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAG--FKHFTFLF 98 Query: 83 DSPYFLQLMSNTLLISLYKLVFGMLPSIILAILFHECRVMWLKRWVQTLSYMPHFLSWII 142 P F +++ NTL +SL LV G + +I LAIL +E R + KR VQT+SYMPHFLSW++ Sbjct: 99 TDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVV 158 Query: 143 IYGISVAFFSETTGLVNRWITEAG--GSSISFLGSTEWFRSMLVSTEIWKDIGWGAIVYL 200 G+ A S G++N + + G I +LG E+F ++ ++++WK++GW I+YL Sbjct: 159 AAGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYL 218 Query: 201 AAISGIDPTLFEAARVDGASRLRMIWHITLPGIRNVXXXXXXXXXGSIMDAGFEQIYVFY 260 AAI+ ID +EAA +DGA+RL+ IW+ITLPG+R V G I+++GFE Y+ Sbjct: 219 AAITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLM 278 Query: 261 NPRVYEVGDIIDTWVYRTGLEQMNFSLATTVGLFKSAIGFVLVLGANKLAKRWG 314 NP + + +D +V R G+ NFSLAT G+FK+ + F+ + AN +AKR G Sbjct: 279 NPMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLG 332 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/296 (37%), Positives = 177/296 (59%), Gaps = 4/296 (1%) Query: 21 WIRIWGMRALYLMLLPCLIWYFVFKYLPMYGVIISFKDYSFTDGILHSPWADPWYKYFKM 80 W RI + L LM +P L+ F+FKY+PMYGV+I+FKDY+ GIL S W + F Sbjct: 11 WERIKKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIG--FSEFTK 68 Query: 81 FFDSPYFLQLMSNTLLISLYKLVFGMLPSIILAILFHECRVMWLKRWVQTLSYMPHFLSW 140 F SP F L++NTL +S+Y L+ G LP IILAI+ ++ +K+ +Q + Y P+F+S Sbjct: 69 FISSPNFGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISV 128 Query: 141 IIIYGISVAFFSETTGLVNRWITEAGGSSISFLGSTEWFRSMLVSTEIWKDIGWGAIVYL 200 ++I G+ FFS G +N +++ G + FL + ++FR + + + IW+ +GW + +Y Sbjct: 129 VVIVGMIFLFFS-VGGPINNFLSMFGMKA-DFLTNPDFFRPLYIFSGIWQGMGWASTLYT 186 Query: 201 AAISGIDPTLFEAARVDGASRLRMIWHITLPGIRNVXXXXXXXXXGSIMDAGFEQIYVFY 260 A + +DP L EAAR+DGA+ + IWHI +P ++ + G IM+ G+E+ ++ Sbjct: 187 ATLVNVDPALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQ 246 Query: 261 NPRVYEVGDIIDTWVYRTGLEQMNFSLATTVGLFKSAIGFVLVLGANKLAKRWGGG 316 +II T+VY+ GL ++S +T VGLF + I VL++ N++ KR G Sbjct: 247 TSLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNG 302 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.142 0.475 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,973,237 Number of extensions: 909669 Number of successful extensions: 2653 Number of sequences better than 1.0e-05: 93 Number of HSP's gapped: 2586 Number of HSP's successfully gapped: 93 Length of query: 318 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 212 Effective length of database: 26,153,027 Effective search space: 5544441724 Effective search space used: 5544441724 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 116 (49.3 bits)