BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0497.0002.p
         (53 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yyaL [O] COG1331 Highly conserved protein containing a thiore...    90   9e-19
BS_yyaO [O] COG1331 Highly conserved protein containing a thiore...    84   4e-17
MTH753 [O] COG1331 Highly conserved protein containing a thiored...    77   7e-15
VNG1303C [O] COG1331 Highly conserved protein containing a thior...    69   2e-12
BMEI0005 [O] COG1331 Highly conserved protein containing a thior...    59   1e-09

>BS_yyaL [O] COG1331 Highly conserved protein containing a thioredoxin
          domain
          Length = 689

 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query: 7  PNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
          PNRL  EKSPYLLQHAHNPV+WFPW EEAFE AKR+NKPV +SIGYS
Sbjct: 7  PNRLINEKSPYLLQHAHNPVDWFPWGEEAFEKAKRENKPVLVSIGYS 53


>BS_yyaO [O] COG1331 Highly conserved protein containing a thioredoxin
          domain
          Length = 79

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 42/53 (79%)

Query: 1  MTTHKVPNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
          M     PNRL  EKSPYLLQHAHNPV+WFPW EEAF  AKR+NKPV +SIGYS
Sbjct: 1  MPNKSKPNRLIAEKSPYLLQHAHNPVDWFPWGEEAFAKAKRENKPVLVSIGYS 53


>MTH753 [O] COG1331 Highly conserved protein containing a thioredoxin
          domain
          Length = 153

 Score = 77.0 bits (188), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 3/46 (6%), Positives = 9/46 (19%)

Query: 8  NRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
              +++S      A +       + E     +             
Sbjct: 7  AYKEEDRSGTARASATHLKISPKHAVEICREIRGMELEKAKKYLEE 52


>VNG1303C [O] COG1331 Highly conserved protein containing a thioredoxin
          domain
          Length = 742

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 35/53 (66%)

Query: 1  MTTHKVPNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
          MT     NRL +  SPYL QHA NPVNW PW E AF  A+  + P+FLSIGYS
Sbjct: 22 MTHPTARNRLDEAASPYLRQHADNPVNWQPWGEPAFSAAREHDVPIFLSIGYS 74


>BMEI0005 [O] COG1331 Highly conserved protein containing a thioredoxin
          domain
          Length = 506

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 8  NRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
          NRLA E S YL QHA+NPV+W PW  +A + AK  ++P+ LSIGY+
Sbjct: 38 NRLAGEPSAYLRQHANNPVHWQPWGRKALDAAKELDRPILLSIGYA 83


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.132    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,144,710
Number of extensions: 103165
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 5
Length of query: 53
Length of database: 38,378,431
Length adjustment: 26
Effective length of query: 27
Effective length of database: 35,379,747
Effective search space: 955253169
Effective search space used: 955253169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)