BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0495.0011.p (455 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1893 [G] COG1653 ABC-type sugar transport system, periplasmic... 182 9e-46 TP0074 [G] COG1653 ABC-type sugar transport system, periplasmic ... 157 2e-38 RSc2144 [G] COG1653 ABC-type sugar transport system, periplasmic... 151 2e-36 PA2338 [G] COG1653 ABC-type sugar transport system, periplasmic ... 145 2e-34 AGc4552 [G] COG1653 ABC-type sugar transport system, periplasmic... 117 3e-26 >YPO1893 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 182 bits (462), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 128/405 (31%), Positives = 205/405 (50%), Gaps = 20/405 (4%) Query: 53 SGQE-IKLAFASHPSTESFQKMTGDFEKLTGIKVKWEVMEETYLKNKQLLDFTGKTGSYD 111 S QE +++ H +++S + + +FEK TGIKV+ E++ + L +K LL F+ +G YD Sbjct: 22 SAQETLRVLLEGHSTSDSIKALLPEFEKQTGIKVQAEIVPYSDLTSKALLAFSSHSGRYD 81 Query: 112 VLMVDGFWMSEYGAKKVVEPLDTFIGNKDLTPAWFDYEDIVPAYRNGISKYNDKIYGIPT 171 V+M D Y + + P+D ++ + A++D D V +Y + + +Y D YG+P Sbjct: 82 VVMDDWVHAVGYASAGYITPVDQWM---ESDTAFYDGADFVKSYADTL-RYKDGYYGLPV 137 Query: 172 AGETRFVAYRKDLFEKYDKQPPKTMAEFLELAKFFNGKESG-LYGVSMRAQRGIHAASGL 230 GE+ F+ YRKDLFE+Y PKT E AK K G + G+++R +GI Sbjct: 138 YGESTFLMYRKDLFEQYGIAVPKTFDELTAAAKTIKEKTEGKVAGITLRGAQGIQNTFAW 197 Query: 231 MTVMYNFGGGFMDQKTGAVTMTDPKTVEAMQFYVDLLKN-APKDVASYTHEEALSAFTSG 289 + ++ +GG ++D G +T P+ VEA + +V++LKN P A++ +E F G Sbjct: 198 ASFLWGYGGQWIDDN-GKSAITSPQAVEATKSFVNILKNYGPIGAANFGWQENRLVFQQG 256 Query: 290 KAAMWLDATALATRILDPSSSQVYDKVGFVPTPEGPA---GKASALAGWNMSLSALSKNK 346 KAAM +D+T DP S V KVG+ P P P G + AL + +S+ SK + Sbjct: 257 KAAMTIDSTVNGGFNEDPKESTVVGKVGYAPVPVQPGDHPGNSGALQVHGLYISSDSKKQ 316 Query: 347 EAAWAFIVYMNSKSNAKTYVQ---GGGVPVRTSIYKDEELVAADPSYPVQLEALNDANVL 403 +AAW FI + K V+ GV ++I D L AL + N Sbjct: 317 DAAWKFISWATDKQTQMKSVELNPNAGVSSLSAINSDAFTKRYGAFKDGMLAALQNGNA- 375 Query: 404 VEKGISWIPPHEKLGQILDRVGYYVSAAMTGEMTVQEAAQKSQTE 448 ++P + QI++ G +S A+ G TV+ A Q++ T Sbjct: 376 -----KYLPTIPQSTQIINITGIALSEALAGTQTVENALQQANTR 415 >TP0074 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 469 Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/403 (24%), Positives = 183/403 (45%), Gaps = 20/403 (4%) Query: 50 EKYSGQEIKLAFASHPSTESFQKMTGDFEKLTGIKVKWEVMEETYLKNKQLLDFTGKTGS 109 +Y+G +++ F H S + + + +FE LTGI V+ + ++ + +KQ+L+ + G Sbjct: 54 RRYAGTRLRVCFPYHASYRALKAIVPEFESLTGIAVEIDWLQYARMHDKQVLELSKPRGD 113 Query: 110 YDVLMVDGFWMSEYGAKKVVEPLDTFIGNKDLTPAWFDYEDIVPAYRNGISKYNDK---- 165 YD++ + W +EY ++ ++ LD+F N L +D+ED++P Y I + Sbjct: 114 YDLIAMLCTWKTEYASRGLLRSLDSFFQNPSLCMPHYDFEDLIPVYVETIGYVGGRKPWL 173 Query: 166 ------IYGIPTAGETRFVAYRKDLFEKYDKQPPKTMAEFLELAKFFNGKESGLYGVSMR 219 + +P ET +AYRKD+F KY + P+ E L+ K + + LYG++ R Sbjct: 174 GGPGAFLCAVPFGAETSILAYRKDIFHKYRIKVPENYDELLDACKRLR-ERAQLYGLASR 232 Query: 220 AQRGIHAASGLMTVMYNFGGGFMDQKTGAVTMTDPKTVEAMQFYVDLLKNAPKDVASYTH 279 G A + FG +D +++ +++ ++ P +AS+ Sbjct: 233 GASGQQALHAYLLHAAPFGAKVLDDSL-VPAFHRSRSIATLRWMQEMFAYGPPGMASFAQ 291 Query: 280 EEALSAFTSGKAAMWLDATALATRILDPSSSQVY-DKVGFVPTPEGPAGKASALAGWNMS 338 EAL AF G+ M+LD + + DP+ S + VGF P +A + G+ ++ Sbjct: 292 NEALQAFLQGQTGMYLDTNMIGPLVRDPTRSAIRPHHVGFALHPMAQV-RAGEVGGFGLA 350 Query: 339 LSALSKNKEAAWAFIVYMNSKSNAKTYVQGGGVPVRTSIYKDEELVAADPSYPVQLEALN 398 + S EAA+ + ++ + + V+ G +P R S D L A + V L Sbjct: 351 IPHNSAAPEAAFLLLQWITAPQTGRRVVEQGALPFRQSQLADRALRARFAEFEVLERQLA 410 Query: 399 DANVLVEKGISWIPPHEKLGQILDRVGYYVSAAMTGEMTVQEA 441 + W P G++ +G ++ +TG +EA Sbjct: 411 HCDP------DWRPIVPTWGELGTLLGIGINEVLTGVSEPEEA 447 >RSc2144 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 441 Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 118/400 (29%), Positives = 193/400 (48%), Gaps = 32/400 (8%) Query: 59 LAFASHPSTESFQKMTGDFEK-LTGIKVKWEVMEETYLKNKQLLDFTGKTGSYDVLMVDG 117 +A ++P +K++ FEK IK+ W ++EE L+ + D T +G +DV+ + Sbjct: 32 IATLNNPDMLELKKLSATFEKNHPDIKLNWVILEENVLRQRATTDITTGSGQFDVMAIGT 91 Query: 118 FWMSEYGAKKVVEPLDTFIGNKDLTPAWFDYEDIVPAYRNGISKYNDKIYGIPTAGETRF 177 + +G + + P+ PA +D D++ R+ +S Y+ ++Y +P E+ Sbjct: 92 YETPLWGKRGWLAPMANL-------PADYDLADVIKTARDSLS-YDGQLYALPFYVESSM 143 Query: 178 VAYRKDLFEKYDKQPPK--TMAEFLELAKFFNGKESGLYGVSMRAQRGI-HAASGLMTVM 234 YRKDLF P T + + A K+ G+YG+ +R + G + + TV+ Sbjct: 144 TFYRKDLFAAKGLTMPDQPTYDQIAQFADKLTDKDKGVYGICLRGKAGWGENMAYVSTVV 203 Query: 235 YNFGGGFMDQKTGAVTMTDPKTVEAMQFYVDLLK-NAPKDVASYTHEEALSAFTSGKAAM 293 FGG + D+K A +T P+ +A+ FYV+LLK N P +S E L+ SGK AM Sbjct: 204 NTFGGRWFDEKWNA-QLTSPEWKKAIGFYVNLLKKNGPPGASSNGFNENLTLTASGKCAM 262 Query: 294 WLDATALATRILDPSSSQVYDKVGFVPTPEGPAGKASA-LAGWNMSLSALSKNKEAAWAF 352 W+DAT A + + SQV DK+GF P K S L W +++ SK +EAA F Sbjct: 263 WIDATVAAGMLYNKQQSQVADKIGFAAAPIADTPKGSHWLWAWALAIPKTSKQQEAAKTF 322 Query: 353 IVYMNSKSNAKTYVQGGG---VP--VRTSIYKDEELVAADPSYPVQLEALNDANV----- 402 + + SK + + G VP R S Y+ E AA P L A+ A+ Sbjct: 323 VTWATSKQYIEMVGKDEGWASVPPGTRASTYQRAEYKAAAPFSDFVLRAIETADPTDPSA 382 Query: 403 --LVEKGISW--IPPHEKLGQILDRVGYYVSAAMTGEMTV 438 + G+++ IP + G + VG ++ A+ G+ +V Sbjct: 383 KKVPYTGVAYVGIPEFQSFGTV---VGQSIAGAVAGQFSV 419 >PA2338 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 436 Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 119/397 (29%), Positives = 191/397 (48%), Gaps = 33/397 (8%) Query: 70 FQKMTGDFEK-LTGIKVKWEVMEETYLKNKQLLDFTGKTGSYDVLMVDGFWMSEYGAKKV 128 Q+++ FE+ I +KW V+EE L+ + D + G +D+L + + + +GAK Sbjct: 39 MQRLSKVFEESHPDIALKWVVLEENVLRQRLTTDIATQGGQFDLLTIGMYEAALWGAKGW 98 Query: 129 VEPLDTFIGNKDLTPAWFDYEDIVPAYRNGISKYNDKIYGIPTAGETRFVAYRKDLFEKY 188 +EP+ PA + +D++P+ R+G+S +Y +P E YRKDLF++ Sbjct: 99 LEPMSGL-------PADYALDDLLPSVRDGLS-VKGTLYALPFYAEASITYYRKDLFQQA 150 Query: 189 DKQPPK--TMAEFLELAKFFNGKESGLYGVSMRAQRGIHAASGLMTVMYN-FGGGFMDQK 245 + P+ T + E A N + G YG+ +R + G L+ + N FG + D++ Sbjct: 151 GLRMPEQPTWTQLGEFAARLNRPDQGQYGICLRGKAGWGENMALIGTLANAFGARWFDER 210 Query: 246 TGAVTMTDPKTVEAMQFYVDLLKN-APKDVASYTHEEALSAFTSGKAAMWLDATALATRI 304 + + +A+ FYV LK P +S E L+ F SGK A+W+DA+ + + Sbjct: 211 WQP-EFSGGEWKKALDFYVSTLKRYGPPGASSNGFNENLALFNSGKCAIWVDASVAGSFV 269 Query: 305 LDPSSSQVYDKVGFVPTPEGPAGK-ASALAGWNMSLSALSKNKEAAWAFIVYMNSKSNAK 363 D S S+V D GF P K AS L W +++ A S+ K+AA AF + S++ K Sbjct: 270 TDKSQSKVADATGFAFAPREVTDKGASWLYSWALAIPASSRAKDAAKAFATWATSQAYGK 329 Query: 364 TYVQGGGVP-----VRTSIYKDEELVAADPSYPVQLEALN--DANVLVEKGISW------ 410 GV R S Y + L AA P V LE+L D N K + + Sbjct: 330 LVADREGVANVPPGTRASTYSEAYLAAA-PFARVTLESLKRVDPNHPTLKPVPYVGIQLV 388 Query: 411 -IPPHEKLGQILDRVGYYVSAAMTGEMTVQEAAQKSQ 446 IP + +G +VG SAA+TG+M+ +A +Q Sbjct: 389 TIPEFQAIGT---QVGKLFSAALTGQMSSDQALAAAQ 422 >AGc4552 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 443 Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/337 (27%), Positives = 155/337 (45%), Gaps = 5/337 (1%) Query: 50 EKYSGQEIKLAFASHPSTESFQKMTGDFEKLTGIKVKWEVMEETYLKNKQLLDFTGKTGS 109 +K++G +++ P +E+ K G+FE+LTGIKV E E + K +++ + S Sbjct: 38 KKHAGTTLEVNLVKSPRSETLIKYLGEFEELTGIKVNAEATPEQQQRQKVVIELSSGKPS 97 Query: 110 YDVLMVD-GFWMSEYGAKKVVEPLDTFIGNKDLTPAWFDYEDIVPAYRNGISKYNDKIYG 168 +DV+ + ++ K + + F+ + LT +D A + + Sbjct: 98 FDVVHLSYHVQKRQFEKGKWLADISGFLKDPSLTDPSLVEKDFAEAGMLFAKDSDGVLRS 157 Query: 169 IPTAGETRFVAYRKDLFEKYDKQPPKTMAEFLELAKFFNGKESGLYGVSMRAQRGIHAAS 228 +P + + V + K+LFE + P+T E + A+ + YG R + + Sbjct: 158 LPFSVDYWIVYWNKELFEAKGLKYPETFEELVTAAEKITDPATNTYGFVARGLKNANTPV 217 Query: 229 GLMTVMYNFGGGFMDQKTGAVTMTDPKTVEAMQFYVDLL-KNAPKDVASYTHEEALSAFT 287 ++M +G + G + + VEA + Y L+ K AP V+ + EA SAF Sbjct: 218 -WTSLMLGYGAKPISAD-GKIDTESKEAVEAAKLYQRLMTKAAPPGVSGFNWAEAQSAFL 275 Query: 288 SGKAAMWLDATALATRILDPSSSQVYDKVGFVPTPEGPAGKASALAGWNMSLSALSKNKE 347 GK MW D A I +P S+V KVG+ P+GPA +A+ G + + S KE Sbjct: 276 QGKIGMWFDGVGFAPPIENPEKSRVVGKVGYGVMPKGPAVQAAGTFGDGLGVVEASSKKE 335 Query: 348 AAWAFIVYMNSKSNAKTYVQ-GGGVPVRTSIYKDEEL 383 AA+ F + S +Q G GVP R SI +D+++ Sbjct: 336 AAYLFCQWAISHDMGARLLQAGAGVPFRQSILEDQKV 372 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.130 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 32,606,494 Number of extensions: 1484025 Number of successful extensions: 2620 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 2590 Number of HSP's successfully gapped: 39 Length of query: 455 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 345 Effective length of database: 25,691,691 Effective search space: 8863633395 Effective search space used: 8863633395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 117 (49.7 bits)