BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0495.0009.p (274 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1895 [G] COG0395 ABC-type sugar transport system, permease co... 197 1e-50 PA2340 [G] COG0395 ABC-type sugar transport system, permease com... 192 3e-49 STM0279 [S] COG3157 Hemolysin-coregulated protein (uncharacterized) 190 2e-48 TM0279 [G] COG0395 ABC-type sugar transport system, permease com... 190 2e-48 RSc2142 [G] COG0395 ABC-type sugar transport system, permease co... 181 8e-46 >YPO1895 [G] COG0395 ABC-type sugar transport system, permease component Length = 275 Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 105/266 (39%), Positives = 164/266 (61%), Gaps = 6/266 (2%) Query: 13 TAIILLLVCIASVF--PLFWMFIISLKTKTETYN--PAIWFFTPTFENYKSIFENRNAIN 68 T LLLV I F P++W+ +S KT + + P +WF TP +NY+ + N + I Sbjct: 12 TGFYLLLVVILVFFLLPIYWLVTMSFKTYIDAFAMPPKLWF-TPILDNYRQVLGNGDFIR 70 Query: 69 YLKNSSIVVVLTTLFSIFIGGLAAYGFARFEFKKKENRAFWVLSLRMLPPMASVIPIFVM 128 NS ++ +++T + +G L AYG F +K + F ++SLR P + VIP++ + Sbjct: 71 AFGNSLLISLVSTFLCLILGALFAYGLVFFIERKGRAKQF-IMSLRYAPVIMLVIPVYYL 129 Query: 129 ASFLGLLDTHVVLIVSYMLFNIPFTIWMMRSFFEEIPVALEEAAFVDGASRFQVFIQVIL 188 + LG+ D ++VLI+ Y + N+PFTI M+ +FFE+IP + EAA VDGAS ++VF+ V+L Sbjct: 130 ITKLGMTDNYLVLILVYTVANVPFTILMVTTFFEDIPPEIREAARVDGASEWRVFLSVML 189 Query: 189 PLALPGLIATSIFCIINSWNEFVFALFLTSSDASTLPTTVTLFLSVSGVVWGEMSAIGIV 248 PLA GL A+ + + WNEF L L+ TLP +T FL+ G WG ++A G + Sbjct: 190 PLARTGLAASGVLTLFFIWNEFQIVLTLSGDSTQTLPVAITSFLTFQGTEWGPLTAAGTL 249 Query: 249 TIMPVLIFAMVVQKYMIRGLTFGGVK 274 ++P+L+ ++VQK+++RGLT GGVK Sbjct: 250 VMLPMLVLGLLVQKHLVRGLTMGGVK 275 >PA2340 [G] COG0395 ABC-type sugar transport system, permease component Length = 277 Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 153/250 (61%), Gaps = 1/250 (0%) Query: 26 FPLFWMFIISLKTKTETY-NPAIWFFTPTFENYKSIFENRNAINYLKNSSIVVVLTTLFS 84 FP+FWM + S K++ + + P + F PT ENY I E + Y NS ++ TL Sbjct: 28 FPIFWMLLTSFKSEIDAFATPPQFIFQPTLENYLHINERSDYFAYAWNSLLISSSATLLC 87 Query: 85 IFIGGLAAYGFARFEFKKKENRAFWVLSLRMLPPMASVIPIFVMASFLGLLDTHVVLIVS 144 + + AAY A FE + + W+LS +MLPP+ ++PI+++A GLLD+ + LI+ Sbjct: 88 MLVAVPAAYSMAFFETRHTKRTLLWMLSTKMLPPVGVLMPIYLLAKQFGLLDSRLALIIV 147 Query: 145 YMLFNIPFTIWMMRSFFEEIPVALEEAAFVDGASRFQVFIQVILPLALPGLIATSIFCII 204 Y L N+P +WM+ ++F++IPV + EAA +DGA +Q ++V+LP+A GL +T + +I Sbjct: 148 YTLINLPIVVWMVYTYFKDIPVDILEAARLDGAGTWQEIVRVLLPIARGGLASTLLLSLI 207 Query: 205 NSWNEFVFALFLTSSDASTLPTTVTLFLSVSGVVWGEMSAIGIVTIMPVLIFAMVVQKYM 264 WNE ++L LTSS A+ L V + S G+ W ++SA+ + P+L+F + QK + Sbjct: 208 LCWNEAFWSLNLTSSAAAPLTALVASYSSPEGLFWAKLSAVSTLACAPILVFGWISQKQL 267 Query: 265 IRGLTFGGVK 274 +RGL+FG VK Sbjct: 268 VRGLSFGAVK 277 >STM0279 [S] COG3157 Hemolysin-coregulated protein (uncharacterized) Length = 161 Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 0/277 (0%), Positives = 0/277 (0%), Gaps = 15/277 (5%) Query: 7 KKLSVVTAIILLLVC-IASVFPLFWMFIISLKTKTETYNPAIWFF--TPTFENYKSIFEN 63 + + I + + + T + + N Sbjct: 3 YDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLSFEHYI 62 Query: 64 R----------NAINYLKNSSIVVVLTTLFSIFIGGLAAYGFARFEFKKKENRAFWVLSL 113 ++ ++ + +V+ + ++ Sbjct: 63 DRASPNLFKYCSSGKHIPQAILVMRKAGGNPLEYLKYTFTDLIIAMVSPS-GSQGGEIAS 121 Query: 114 RMLPPMASVIPIFVMASFLGLLDTHVVLIVSYMLFNIPFTIWMMRSFFEEIPVALEEAAF 173 Sbjct: 122 181 Query: 174 VDGASRFQVFIQVILPLALPGLIATSIFCIINSWNEFVFALFLT-SSDASTLPTTVTLFL 232 Sbjct: 182 241 Query: 233 SVSGVVWGEMSAIGIVTIMPVLIFAMVVQKYMIRGLT 269 Sbjct: 242 278 >TM0279 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/277 (39%), Positives = 166/277 (59%), Gaps = 15/277 (5%) Query: 7 KKLSVVTAIILLLVC-IASVFPLFWMFIISLKTKTETYNPAIWFF--TPTFENYKSIFEN 63 KK+ + IL+ +C I +FP++W+ I + K E + FF PT N+ E Sbjct: 3 KKILTIVRYILIAICLIFFLFPVYWLVITAFKPSDEWFTMPPRFFPTKPTLANFFGAKET 62 Query: 64 R----------NAINYLKNSSIVVVLTTLFSIFIGGLAAYGFARFEFKKKENRAFWVLSL 113 N YL+NS +V V L I LAAY AR+ A W++S+ Sbjct: 63 EVFGGTTGSIENIFPYLRNSIVVGVSVALIGTVISALAAYAIARYRVGGP-FLAEWIISI 121 Query: 114 RMLPPMASVIPIFVMASFLGLLDTHVVLIVSYMLFNIPFTIWMMRSFFEEIPVALEEAAF 173 RMLPP+ S +P++V+ + L L++T LI+S+++ +P +W++ SFF EIP ++EAA+ Sbjct: 122 RMLPPIVSAVPLYVIFTKLRLINTWWALILSHLVIVVPLGVWLLISFFREIPREIDEAAY 181 Query: 174 VDGASRFQVFIQVILPLALPGLIATSIFCIINSWNEFVFALFLT-SSDASTLPTTVTLFL 232 VDGA+ FQ F V+LPL+ PGL A ++ +I SW EF+ AL LT + A TLP + ++ Sbjct: 182 VDGATPFQAFFYVVLPLSAPGLAAVAVLSLIQSWGEFLLALVLTNDARAQTLPIFLGRYI 241 Query: 233 SVSGVVWGEMSAIGIVTIMPVLIFAMVVQKYMIRGLT 269 + V WG +SA GIVT++PV++FA+V Q+Y+IRGLT Sbjct: 242 TGWRVAWGPLSAAGIVTMLPVVVFALVAQRYLIRGLT 278 >RSc2142 [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 88/261 (33%), Positives = 159/261 (60%), Gaps = 1/261 (0%) Query: 14 AIILLLVCIASVFPLFWMFIISLKTKTETYNPAIWFFTPTFENYKSIFENRNAINYLKNS 73 ++ L+ +A FP+FWM I + KT+ + Y ++ FF PT ++++ +F N + NS Sbjct: 27 GVLAWLIALALFFPIFWMAITAFKTEQQAYEASL-FFVPTLDSFREVFARSNYFAFAWNS 85 Query: 74 SIVVVLTTLFSIFIGGLAAYGFARFEFKKKENRAFWVLSLRMLPPMASVIPIFVMASFLG 133 ++ T+ + + AAY A F ++ + W+LS +M+P + ++PI+++ G Sbjct: 86 VLISAGVTVICLALAVPAAYAMAFFPNRRTQKVLLWMLSTKMMPSVGVLVPIYLLWKNAG 145 Query: 134 LLDTHVVLIVSYMLFNIPFTIWMMRSFFEEIPVALEEAAFVDGASRFQVFIQVILPLALP 193 LLDT L++ Y L N+P +WM ++F EIP + E+ +DGAS +Q + +++P+ALP Sbjct: 146 LLDTVSGLVIVYALINLPIAVWMAFTYFNEIPKDILESGRIDGASTWQEIVYLLMPMALP 205 Query: 194 GLIATSIFCIINSWNEFVFALFLTSSDASTLPTTVTLFLSVSGVVWGEMSAIGIVTIMPV 253 GL +T++ +I SWNE +++ L+SS+A+ L + + S G+ W ++SA ++ + P+ Sbjct: 206 GLASTALLLVILSWNEAFWSINLSSSNAAPLTVFIASYSSPEGLFWAKLSAASLLAVAPI 265 Query: 254 LIFAMVVQKYMIRGLTFGGVK 274 L+ + QK ++RGLTFG VK Sbjct: 266 LVVGWLSQKQLVRGLTFGAVK 286 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.142 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,811,715 Number of extensions: 670745 Number of successful extensions: 3089 Number of sequences better than 1.0e-05: 237 Number of HSP's gapped: 2794 Number of HSP's successfully gapped: 240 Length of query: 274 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 169 Effective length of database: 26,268,361 Effective search space: 4439353009 Effective search space used: 4439353009 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)