BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0495.0003.p (540 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value aq_035_2 [T] COG2199 FOG: GGDEF domain 138 2e-32 CC2462 [T] COG3706 Response regulator containing a CheY-like rec... 132 2e-30 PA3702 [T] COG3706 Response regulator containing a CheY-like rec... 129 1e-29 AGc2387 [T] COG3706 Response regulator containing a CheY-like re... 122 1e-27 mll9509 [T] COG3706 Response regulator containing a CheY-like re... 122 2e-27 >aq_035_2 [T] COG2199 FOG: GGDEF domain Length = 251 Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 113/178 (63%), Gaps = 4/178 (2%) Query: 361 VQKELSETNRQ---LQQMAITDSLTGCYNRHYLTQQLEDEVILNREKHIPFALILLDIDF 417 ++K L ET+++ ++MA+TD LTG YNR T+ E E+ + F+++++DID Sbjct: 66 LKKILIETSKEKTLYERMALTDPLTGLYNRRVFTEMAEKELAKAKRYGYNFSILMIDIDN 125 Query: 418 FKNVNDTYGHLAGDEVICQTVEVLKQELRQTDVLARYGGEEFIIYLPDTREAEALHVAEQ 477 FK +NDTYGH GD V+ + E+LK+ +R D++AR+GGEEFI+ L +T A+ AEQ Sbjct: 126 FKKINDTYGHDVGDLVLKKISEILKRNVRGADLVARFGGEEFIVMLSNTNLNGAVKKAEQ 185 Query: 478 LKATVEMNQITIANAADPVTVTISMGLLTINDFSLNSNLFEDVDQALYQAKNKGRNRI 535 L+ +E I + N + + VT+S+G+ T L ++ DQALY+AK KG+NR+ Sbjct: 186 LRRMIEQTPIELPN-GEKLRVTVSIGVSTYRGHESLEELIKEADQALYEAKRKGKNRV 242 >CC2462 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Length = 454 Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/167 (40%), Positives = 103/167 (61%), Gaps = 1/167 (0%) Query: 374 QMAITDSLTGCYNRHYLTQQLEDEVILNREKHIPFALILLDIDFFKNVNDTYGHLAGDEV 433 ++A+TD LTG +NR Y+T QL+ V P + +L+DIDFFK +NDT+GH GDEV Sbjct: 287 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEV 346 Query: 434 ICQTVEVLKQELRQTDVLARYGGEEFIIYLPDTREAEALHVAEQLKATVEMNQITIANAA 493 + + L +R D+ RYGGEEF++ +PDT A+AL +AE+++ V + T+A+ Sbjct: 347 LREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGR 406 Query: 494 DPVTVTISMGL-LTINDFSLNSNLFEDVDQALYQAKNKGRNRIVHIA 539 + + VTIS+G+ T + L + D+ +YQAK GRN +V A Sbjct: 407 EMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKA 453 >PA3702 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Length = 347 Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/215 (36%), Positives = 122/215 (56%), Gaps = 7/215 (3%) Query: 328 IVTFQDITELQRLIHETHQQNRVLQERNHSLIAV---QKELSETNRQLQQMAITDSLTGC 384 +V D EL I + LQ+R+ + A+ Q++L ETN LQ++ +D LTG Sbjct: 120 LVKLPDAIELVARIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGL 179 Query: 385 YNRHYLTQQLEDEVILNREKHIPFALILLDIDFFKNVNDTYGHLAGDEVICQTVEVLKQE 444 NR + + LE E + + +L+++D+D+FK+ NDT+GH+AGDE + Q +++ Sbjct: 180 SNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREG 239 Query: 445 L-RQTDVLARYGGEEFIIYLPDTREAEALHVAEQLKATVEMNQITIANAADPVTVTISMG 503 R +D+ ARYGGEEF + LP T A +AE+++ TVE QI+ +T+S+G Sbjct: 240 CSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIG 299 Query: 504 LLTINDFSLNSN---LFEDVDQALYQAKNKGRNRI 535 + T+ L E DQALYQAKN GRN++ Sbjct: 300 VSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334 >AGc2387 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Length = 218 Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 0/169 (0%), Positives = 0/169 (0%), Gaps = 5/169 (2%) Query: 374 QMAITDSLTGCYNRHYLTQQLEDEVILNRE--KHIPFALILLDIDFFKNVNDTYGHLAGD 431 Sbjct: 289 -- 346 Query: 432 EVICQTVEVLKQELRQTDVLARYGGEEFIIYLPDTREAEALHVAEQLKATVEMNQITIAN 491 Sbjct: 347 406 Query: 492 AADPVTVTISMGLLTIND-FSLNSNLFEDVDQALYQAKNKGRNRIVHIA 539 Sbjct: 407 455 >mll9509 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Length = 354 Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 105/181 (58%), Gaps = 4/181 (2%) Query: 362 QKELSETNRQLQQMAITDSLTGCYNRHYLTQQLEDEVILNREKHIPFALILLDIDFFKNV 421 Q++L N +L+++ D LTG NR Y + L E P +L+++D D FK Sbjct: 175 QRQLISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRY 234 Query: 422 NDTYGHLAGDEVICQTVEVLKQ-ELRQTDVLARYGGEEFIIYLPDTREAEALHVAEQLKA 480 NDTYGH+AGDEV+ Q V+ R TD+ ARYGGEEF+I L DT E+ +AEQL Sbjct: 235 NDTYGHMAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIAEQLVQ 294 Query: 481 TVEMNQITIANAADPVTVTISMGLLTINDFSLNSNLFEDVDQALYQAKNKGRNRI-VHIA 539 V ++ I + D VT+++ + N+ ++ D AL++AK++GRNR+ +H++ Sbjct: 295 GVR--ELNIPHGPDRVTISVGVATTVPNENETPNDFVNAADLALFRAKSEGRNRVALHLS 352 Query: 540 R 540 R Sbjct: 353 R 353 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 34,744,762 Number of extensions: 1297046 Number of successful extensions: 3736 Number of sequences better than 1.0e-05: 140 Number of HSP's gapped: 3585 Number of HSP's successfully gapped: 140 Length of query: 540 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 429 Effective length of database: 25,576,357 Effective search space: 10972257153 Effective search space used: 10972257153 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 118 (50.1 bits)