BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0495.0001.p
         (255 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3675 [K] COG0789 Predicted transcriptional regulators               149   5e-36
ybbI [K] COG0789 Predicted transcriptional regulators                  53   5e-07
ZybbI [K] COG0789 Predicted transcriptional regulators                 53   5e-07
ECs0545 [K] COG0789 Predicted transcriptional regulators               53   6e-07
STM0499 [K] COG0789 Predicted transcriptional regulators               51   2e-06

>BH3675 [K] COG0789 Predicted transcriptional regulators
          Length = 131

 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 90/123 (73%), Gaps = 3/123 (2%)

Query: 125 MSIGEAAAIAGVQPSAIRHWEKEGLLTPLRNPENGYRMYTAVHXXXXXXXXXXXXXVYFL 184
           M+IGEAA +  VQ SAIRHWEKEGLL+P RN ENGYR+YT VH             VYFL
Sbjct: 1   MTIGEAAELTNVQTSAIRHWEKEGLLSPERNLENGYRLYTPVHIRQILLIRTLRKTVYFL 60

Query: 185 ERMKELVEAVEQHSLEKAKEVTEHALGRIHQRNRQQYSGVHQLMELCAQAGLLRPEDAAS 244
           ++MKE+V+AVE  S+EKAK++TE AL  IHQRNRQQ++GVHQ++ELC + G++   D   
Sbjct: 61  DKMKEVVDAVEHQSIEKAKKITEEALVSIHQRNRQQFNGVHQMIELCIEVGMMEYND--- 117

Query: 245 PSM 247
           PS+
Sbjct: 118 PSL 120


>ybbI [K] COG0789 Predicted transcriptional regulators
          Length = 135

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 125 MSIGEAAAIAGVQPSAIRHWEKEGLLTPLRNPENGYRMYTAVHXXXXXXXXXXXXXVYFL 184
           M+I + A I G+   AIR +E++GL+TP    ENGYR YT  H              + L
Sbjct: 1   MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL 60

Query: 185 ERMKELVE----------AVEQHSLEKAKEVTEH 208
           E   ELV            V++ +LEK  E+  H
Sbjct: 61  EESGELVNLFNDPQRHSADVKRRTLEKVAEIERH 94


>ZybbI [K] COG0789 Predicted transcriptional regulators
          Length = 135

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 125 MSIGEAAAIAGVQPSAIRHWEKEGLLTPLRNPENGYRMYTAVHXXXXXXXXXXXXXVYFL 184
           M+I + A I G+   AIR +E++GL+TP    ENGYR YT  H              + L
Sbjct: 1   MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL 60

Query: 185 ERMKELVE----------AVEQHSLEKAKEVTEH 208
           E   ELV            V++ +LEK  E+  H
Sbjct: 61  EESGELVNLFNDPQRHSADVKRRTLEKVAEIERH 94


>ECs0545 [K] COG0789 Predicted transcriptional regulators
          Length = 135

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 125 MSIGEAAAIAGVQPSAIRHWEKEGLLTPLRNPENGYRMYTAVHXXXXXXXXXXXXXVYFL 184
           M+I + A I G+   AIR +E++GL+TP    ENGYR YT  H              + L
Sbjct: 1   MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL 60

Query: 185 ERMKELVE----------AVEQHSLEKAKEVTEH 208
           E   ELV            V++ +LEK  E+  H
Sbjct: 61  EESGELVNLFNDPQRHSADVKRRTLEKVAEIERH 94


>STM0499 [K] COG0789 Predicted transcriptional regulators
          Length = 138

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 125 MSIGEAAAIAGVQPSAIRHWEKEGLLTPLRNPENGYRMYTAVHXXXXXXXXXXXXXVYFL 184
           M+I + A   G+   AIR +E++GL+TP    ENGYR YT  H              + L
Sbjct: 1   MNISDVAKKTGLTSKAIRFYEEKGLVTPPLRSENGYRTYTQKHLNELTLLRQARQVGFNL 60

Query: 185 ERMKELVE----------AVEQHSLEKAKEVTEH 208
           E   ELV            V++ +LEK  E+  H
Sbjct: 61  EECGELVNLFNDPRRHSADVKKRTLEKVAEIERH 94


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 17,045,562
Number of extensions: 578777
Number of successful extensions: 2624
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2633
Number of HSP's successfully gapped: 5
Length of query: 255
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 151
Effective length of database: 26,383,695
Effective search space: 3983937945
Effective search space used: 3983937945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)