BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0494.0002.p
         (96 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1796 [G] COG1626 Neutral trehalase                                  58   4e-09
asr1570 [L] COG1343 Uncharacterized protein predicted to be invo...    54   7e-08
AF2434 [L] COG1343 Uncharacterized protein predicted to be invol...    48   3e-06

>STM1796 [G] COG1626 Neutral trehalase
          Length = 570

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 3/89 (3%), Positives = 10/89 (11%), Gaps = 6/89 (6%)

Query: 1  MLVVITYDVSTLSGEGQSRLRKVSKICQNYGQRVQNSVFECVVDAAQFAELKIKLKTIID 60
          M+                +      +          S       +         +     
Sbjct: 1  MIPPEIRRSV------LLQKAIKLALAGTLLTFASFSATAADPSSDTETPQPPDILLGPL 54

Query: 61 DDEDSIRFYQLGNNHKNKVEHVGIKKSID 89
           ++                        I 
Sbjct: 55 FNDVQNAKLFPDQKTFADAIPNSDPLMIL 83


>asr1570 [L] COG1343 Uncharacterized protein predicted to be involved in
          DNA repair
          Length = 673

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 0/56 (0%), Positives = 6/56 (10%)

Query: 34 VQNSVFECVVDAAQFAELKIKLKTIIDDDEDSIRFYQLGNNHKNKVEHVGIKKSID 89
          ++ +  +            +                                 +  
Sbjct: 1  MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT 56


>AF2434 [L] COG1343 Uncharacterized protein predicted to be involved in
          DNA repair
          Length = 673

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 3/71 (4%), Positives = 12/71 (16%)

Query: 18 SRLRKVSKICQNYGQRVQNSVFECVVDAAQFAELKIKLKTIIDDDEDSIRFYQLGNNHKN 77
               ++       + + N +   +      A     +        +           K 
Sbjct: 16 GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75

Query: 78 KVEHVGIKKSI 88
              +      
Sbjct: 76 ARGLMISTFHT 86


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.137    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,295,421
Number of extensions: 188047
Number of successful extensions: 323
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 3
Length of query: 96
Length of database: 38,378,431
Length adjustment: 65
Effective length of query: 31
Effective length of database: 30,881,721
Effective search space: 957333351
Effective search space used: 957333351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)