BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0028.p (224 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2923 [D] COG1192 ATPases involved in chromosome partitioning 132 4e-31 CAC3730 [D] COG1192 ATPases involved in chromosome partitioning 124 1e-28 Rv3918c [D] COG1192 ATPases involved in chromosome partitioning 119 3e-27 MT4037 [D] COG1192 ATPases involved in chromosome partitioning 119 3e-27 RC0086 [D] COG1192 ATPases involved in chromosome partitioning 118 6e-27 >lin2923 [D] COG1192 ATPases involved in chromosome partitioning Length = 253 Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 121/219 (55%), Gaps = 27/219 (12%) Query: 31 TTVITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQ-------- 82 + VI +ANQKGG GKTT++ NL+ +L+ GKKVLLVD DPQGN S G+ + Sbjct: 2 SKVIALANQKGGVGKTTSSVNLSSSLAFLGKKVLLVDIDPQGNASSGVGVNKGEIEHCIY 61 Query: 83 ---------PDQLQLSMFNVMNAIMSD--------EPLPPAEEYIHTHGNIDLIPSNIEL 125 D LQ + + +N I + E +P I ID I + + Sbjct: 62 DVLVDDVAIQDVLQKTDLDNLNVIPATIQLAGAEVELVPAISREIRLKKAIDSIRDDYDY 121 Query: 126 SVAEINPSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCINPRISIEGI 185 + + PSLGLLT+NAL A+DSVLIPV + ++ GL+QLL I V+K +N + IEG+ Sbjct: 122 VIIDCPPSLGLLTLNALTAADSVLIPVQCEYYALEGLSQLLNTIRIVQKHLNEDLQIEGV 181 Query: 186 LMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 L+TM + RTNL + VK Y++ +F IP +V+ Sbjct: 182 LLTMLDARTNLGIQVIEEVKKYFQN--KVFNTIIPRNVR 218 >CAC3730 [D] COG1192 ATPases involved in chromosome partitioning Length = 253 Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 36/222 (16%) Query: 33 VITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQLQLSMFN 92 VI++ NQKGG GKTTT NL L+ +G KVL +D DPQGN + GI++ L+LS ++ Sbjct: 3 VISVFNQKGGVGKTTTNINLCTYLAMKGLKVLTIDIDPQGNTTSGLGIDKS-TLELSTYD 61 Query: 93 VMNAIMSDEPLPPAEEYIHTHGNIDLIPSNIELSVAEIN--------------------- 131 + ++ E + + I N+ + PS +EL+ AE+ Sbjct: 62 ALTTDVALEDIIQESQLIK---NLYIAPSTVELAGAEVELINIDNRERILKNKIKAMNKK 118 Query: 132 ---------PSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCINPRISI 182 PSLG +TIN+L AS+SVLIP+ + ++ G+ QL+ + VKK +N ++ + Sbjct: 119 FDYIFIDCPPSLGFITINSLTASNSVLIPIQTEFYALEGVGQLVNTVQLVKKSLNKQLEV 178 Query: 183 EGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 EG+++TMC+ RT L E + VK Y+ + ++ IP +++ Sbjct: 179 EGVILTMCDNRTKLSNEVAQEVKKYF--SGKLYNTTIPRNIR 218 >Rv3918c [D] COG1192 ATPases involved in chromosome partitioning Length = 347 Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 30/227 (13%) Query: 26 KNSGRTTVITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQ 85 + GR V+TIANQKGG GKTTTA N+A AL+ +G K L++D DPQGN S GI Sbjct: 79 QRPGRRRVLTIANQKGGVGKTTTAVNIAAALAVQGLKTLVIDLDPQGNASTALGITDRQS 138 Query: 86 LQLSMFNVMNAIMSDEPL----PPAEEYIHTHGNIDLIPSNIEL--SVAEIN-------- 131 S + ++ +S P +E IDL + IEL VA N Sbjct: 139 GTPSSYEMLIGEVSLHTALRRSPHSERLFCIPATIDLAGAEIELVSMVARENRLRTALAA 198 Query: 132 --------------PSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCIN 177 PSLGLLTINAL A+ V+IP+ + ++ G++QL+R I VK +N Sbjct: 199 LDNFDFDYVFVDCPPSLGLLTINALVAAPEVMIPIQCEYYALEGVSQLMRNIEMVKAHLN 258 Query: 178 PRISIEGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 P++ + +++TM + RT L + V+ Y+ + IP SVK Sbjct: 259 PQLEVTTVILTMYDGRTKLADQVADEVRQYFGS--KVLRTVIPRSVK 303 >MT4037 [D] COG1192 ATPases involved in chromosome partitioning Length = 381 Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 30/227 (13%) Query: 26 KNSGRTTVITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQ 85 + GR V+TIANQKGG GKTTTA N+A AL+ +G K L++D DPQGN S GI Sbjct: 113 QRPGRRRVLTIANQKGGVGKTTTAVNIAAALAVQGLKTLVIDLDPQGNASTALGITDRQS 172 Query: 86 LQLSMFNVMNAIMSDEPL----PPAEEYIHTHGNIDLIPSNIEL--SVAEIN-------- 131 S + ++ +S P +E IDL + IEL VA N Sbjct: 173 GTPSSYEMLIGEVSLHTALRRSPHSERLFCIPATIDLAGAEIELVSMVARENRLRTALAA 232 Query: 132 --------------PSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCIN 177 PSLGLLTINAL A+ V+IP+ + ++ G++QL+R I VK +N Sbjct: 233 LDNFDFDYVFVDCPPSLGLLTINALVAAPEVMIPIQCEYYALEGVSQLMRNIEMVKAHLN 292 Query: 178 PRISIEGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 P++ + +++TM + RT L + V+ Y+ + IP SVK Sbjct: 293 PQLEVTTVILTMYDGRTKLADQVADEVRQYFGS--KVLRTVIPRSVK 337 >RC0086 [D] COG1192 ATPases involved in chromosome partitioning Length = 255 Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 117/228 (51%), Gaps = 49/228 (21%) Query: 33 VITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPD------QL 86 VI I NQKGG KTTT NLA A + KK+L++D DPQGN S FGI Q Q+ Sbjct: 3 VIAIVNQKGGVAKTTTTVNLATAFAAVNKKILVIDLDPQGNSSTGFGISQQQRKNTIYQV 62 Query: 87 QLSMFNVMNAIMSDEPLPPAEEYIHTHGNIDLIPSNIELSVAEIN--------------- 131 ++ + +AI+S + +P N+++I SN LS AE++ Sbjct: 63 LTNLIELQDAIISTD-IP----------NLEIITSNTNLSAAELDLTKLKDREYILMKLL 111 Query: 132 ---------------PSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCI 176 PSL LLT+NAL ASD VLIP+ +S GL+ LL+ I V+K + Sbjct: 112 AEIKILYDYIIIDCPPSLNLLTVNALVASDEVLIPMQCDFYSLEGLSHLLKTIEIVEKKL 171 Query: 177 NPRISIEGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 NP+I I GIL TM + R L ++ V+ E +F+ IP ++K Sbjct: 172 NPKIKIAGILFTMYDKRNRLTEQVEDDVRKCLGEL--VFKTVIPRNIK 217 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,870,936 Number of extensions: 612017 Number of successful extensions: 3173 Number of sequences better than 1.0e-05: 100 Number of HSP's gapped: 3136 Number of HSP's successfully gapped: 105 Length of query: 224 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 121 Effective length of database: 26,499,029 Effective search space: 3206382509 Effective search space used: 3206382509 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)