BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0020.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 124 1e-28 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 124 2e-28 AGc4553 [G] COG1175 ABC-type sugar transport systems, permease c... 110 3e-24 YPO1722 [G] COG1175 ABC-type sugar transport systems, permease c... 105 9e-23 lin0760 [G] COG1175 ABC-type sugar transport systems, permease c... 97 2e-20 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/294 (28%), Positives = 143/294 (48%), Gaps = 6/294 (2%) Query: 1 MVRKNKGYITLFLLPTVVLFIVVYAVSIVILFGTSFTEWSS-GRKPVFIGLANYIQLFTD 59 MV +NK LFL+P +V + VY +F + F +WSS + FIGL NY++LF Sbjct: 1 MVNQNKIIPYLFLVPALVFLLFVYIPIFENVFLSLF-QWSSFSPEKTFIGLKNYVELF-H 58 Query: 60 DSDFRKSFLNTGLWVLLQSTIHVAIGTAFAIILNMK--EFYWKFARTVYMFPNIISGAAV 117 D F ++ N L+ ++ V G A +L K + F RTV+ P +IS + Sbjct: 59 DPVFYQALTNNVLYAVISIVCQVFGGLILAAVLEDKLVRKWSPFFRTVFFLPVVISMTVI 118 Query: 118 GMLFLCMLNPDFGAVNSIVRLFGHADYAQNWFMDYTTAFFSVT-MTWLPYAAVVTILILA 176 +LF + NP+ G +N +++ G + W D +TA SV ++ + +L + Sbjct: 119 ALLFDFIYNPETGLLNQLLQAIGLDQLTRAWLGDDSTAMLSVIFVSQWQSVGYIAMLYIV 178 Query: 177 EIAAIPDSLFESARIDGASELKIIFYIILPMLRNIIGTCVILAGTSMLQKMDIIMMTTGG 236 I IPD L+E+AR+DGA +++ F+I +P + + V++ T + + TGG Sbjct: 179 SIQKIPDELYEAARLDGAGKIQQFFHITVPQTKEMSFVAVVMTLTGAFTVFNEPYILTGG 238 Query: 237 GPGNETMNLPIYIYKTALMENNFGYSNSXXXXXXXXXXXXXXXCRNLFRIGSSQ 290 GPG + L ++YK+A ++ GY+++ F+ G + Sbjct: 239 GPGKASEVLSTFLYKSAFTKDMMGYASAIATVVLIITLALSLMQMKFFKTGKEE 292 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/264 (33%), Positives = 136/264 (51%), Gaps = 6/264 (2%) Query: 3 RKNKGYITLFLLPTVVLFIVVYAVSIVILFGTSFTEWSSGRKPVFIGLANYIQLFTDDSD 62 +K ++ +FLLP ++ F++ A+ I+ G SFT+W F G NY +LF +D + Sbjct: 7 KKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLF-NDPE 65 Query: 63 FRKSFLNTGLWVLLQSTIHVAIGTAFAIILNMKEFYWKFARTVYMFPNIISGAAVGMLFL 122 F KSF NT +++ + +G A A++LN K F R VY P I S AV +++ Sbjct: 66 FWKSFRNTITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWK 125 Query: 123 CMLNPDFGAVNSIVRLFGHADYAQNWFMDYTTAFFSVTMT--WLPYAAVVTILILAEIAA 180 + NP +G +N + L G A NW D TA +V +T W V +L L + Sbjct: 126 WLFNPSYGLINYFLSLIGIA--GPNWLTDPQTAMIAVIITSAWKD-IGFVMVLFLGGLQN 182 Query: 181 IPDSLFESARIDGASELKIIFYIILPMLRNIIGTCVILAGTSMLQKMDIIMMTTGGGPGN 240 I S +E+A +DGAS+L+ +F I +P+L I++ + Q D +M+ T GGP Sbjct: 183 ISPSYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSG 242 Query: 241 ETMNLPIYIYKTALMENNFGYSNS 264 TM L IY A GY+++ Sbjct: 243 ATMTLVQNIYNHAFRYFEMGYASA 266 >AGc4553 [G] COG1175 ABC-type sugar transport systems, permease components Length = 312 Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 129/255 (50%), Gaps = 6/255 (2%) Query: 12 FLLPTVVLFIVVYAVSIVILFGTSFTEWSSGRKPVFIGLANYIQLFTDDSDFRKSFLNTG 71 F++P +V+ V V S W+ G++ FIG NYI+L D F +S +T Sbjct: 31 FVIPALVVISAVIVFPWVFTLWMSVHRWTLGQEQSFIGFDNYIRL-ASDLRFWESLWHTL 89 Query: 72 LWVLLQSTIHVAIGTAFAIILNMKEFYWKFARTVYMFPNIISGAAVGMLFLCMLNPDFGA 131 ++ +L + +GT A++ + + F R V++ P + + A+ +++ M +P G Sbjct: 90 IYTVLSVVAPLFLGTLAALVFDAQFPLRGFLRGVFVMPMMATPVAIALVWTMMFHPQLGV 149 Query: 132 VNSIVRLFGHADYAQNWFMDYTTAFFSVTM--TWLPYAAVVTILILAEIAAIPDSLFESA 189 +N ++ L G W + +T S+ + TW + +V +++L +AA+P +ESA Sbjct: 150 LNYLLSLIGIGPL--EWIYNQSTVIPSLVLVETW-QWTPLVMLIVLGGLAAVPREPYESA 206 Query: 190 RIDGASELKIIFYIILPMLRNIIGTCVILAGTSMLQKMDIIMMTTGGGPGNETMNLPIYI 249 IDGA+ + Y+ +PM+ + VI+ ++ DII T GGPG + + IY+ Sbjct: 207 EIDGANAWQKFRYLTMPMIAPFLMIAVIIRSIDAVKSFDIIYAMTQGGPGTASETINIYL 266 Query: 250 YKTALMENNFGYSNS 264 Y TA + GY ++ Sbjct: 267 YNTAFSYYDIGYGSA 281 >YPO1722 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 125/251 (49%), Gaps = 4/251 (1%) Query: 12 FLLPTVVLFIVVYAVSIVILFGTSFTEWSSGRKPVFIGLANYIQLFTDDSDFRKSFLNTG 71 ++ P ++ I+ A V F SFTE+ PV+ G+ NY + T+D F KS T Sbjct: 11 YISPYIIGLIIFTAFPFVSSFFLSFTEYDLMSPPVYNGIENYRYMLTEDDLFWKSMGVTF 70 Query: 72 LWVLLQSTIHVAIGTAFAIILNMKEFYWKFARTVYMFPNII-SGAAVGMLFLCMLNPDFG 130 +V L + +A A +LN K F RT + P+I+ S A+ +L+ + D G Sbjct: 71 AYVFLTIPLKLAFALGIAFVLNFKLRGIGFFRTAFYIPSILGSSVAIAVLWRALFAID-G 129 Query: 131 AVNSIVRLFGHADYAQNWFMDYTTAFFSVTMTWLPYAAVVTILILAEIAAIPDSLFESAR 190 +NS + +FG A NW + + A SVT+ + ++ LA + +P S +E+A Sbjct: 130 LLNSFIGVFGFE--AINWLGEPSLALTSVTLLRVWQFGSAMVIFLAALQNVPQSQYEAAM 187 Query: 191 IDGASELKIIFYIILPMLRNIIGTCVILAGTSMLQKMDIIMMTTGGGPGNETMNLPIYIY 250 IDGAS+ ++ + +P++ +I I+ T Q+ + TGGGP + T +YIY Sbjct: 188 IDGASKWQMFMKVTVPLITPVIFFNFIMQTTQAFQEFTAPYVITGGGPTHYTYLFSLYIY 247 Query: 251 KTALMENNFGY 261 TA + GY Sbjct: 248 DTAFKYFDMGY 258 >lin0760 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 6/256 (2%) Query: 11 LFLLPTVVLFIVVYAVSIVILFGTSFTEWSSGRKPVFIGLANYIQLFTDDSDFRKSFLNT 70 LF+ V+L + + I + SFT++ P +IG NYI++F D F S NT Sbjct: 19 LFIALPVLLLAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIKMFRDPY-FLISLKNT 77 Query: 71 GLWVLLQSTIHVAIGTAFAIILNMKEFYWKFARTVYMFPNIISGAAVGMLFLCMLNPDFG 130 ++ L + + AI++NM + RT + P + S A ++ +LNP +G Sbjct: 78 IIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCSTVATATIWYWLLNPQYG 137 Query: 131 AVNSIVRLFGHADYAQNWFMDYTTAFFSVTM--TWLPYAAVVTILILAEIAAIPDSLFES 188 +N ++ FG A W D A F++ M W+ + + I LA + IP +L+E+ Sbjct: 138 LINRVLGWFGINGPA--WLYDSNWAMFAIVMMSVWMTFGTNMMIF-LAGLQGIPANLYEA 194 Query: 189 ARIDGASELKIIFYIILPMLRNIIGTCVILAGTSMLQKMDIIMMTTGGGPGNETMNLPIY 248 ++I+GAS K Y+ P L + + Q D + T GGPGN T+ L Y Sbjct: 195 SKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGNSTITLVYY 254 Query: 249 IYKTALMENNFGYSNS 264 IY GY+++ Sbjct: 255 IYNEGFGGLKMGYASA 270 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.141 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,658,129 Number of extensions: 801083 Number of successful extensions: 3038 Number of sequences better than 1.0e-05: 153 Number of HSP's gapped: 2855 Number of HSP's successfully gapped: 153 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)