BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0017.p (235 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC2614 [R] COG0637 Predicted phosphatase/phosphohexomutase 184 8e-47 lin2964 [R] COG0637 Predicted phosphatase/phosphohexomutase 178 5e-45 BS_yvdM [R] COG0637 Predicted phosphatase/phosphohexomutase 172 5e-43 ZycjU [R] COG0637 Predicted phosphatase/phosphohexomutase 169 4e-42 ECs1896 [R] COG0637 Predicted phosphatase/phosphohexomutase 169 4e-42 >CAC2614 [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 15/188 (7%), Positives = 34/188 (18%), Gaps = 1/188 (0%) Query: 6 FEAAIFDLDGVIVDTAKFHYKAWKRLAGELGFAFSESENEQLKGVSRMESLDLLLRCGGI 65 + V + + + + + + E + R Sbjct: 3 YHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQ 62 Query: 66 TDVSPERREALASRKNEWYKELLATLTPADVLPGVRSFLGLLRSQGIQTGIASASKNTPL 125 ++ K ++A+ + A L Sbjct: 63 GLTETYVGN-WLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRL 121 Query: 126 IMDKVNIRPLFDAVVDGNSIVRAKPDPEVFLQAARLLGVAPAACFVFEDAAAGVEGALRA 185 D +++ + N + A LL A G Sbjct: 122 QTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNE 181 Query: 186 GMRVVGIG 193 V Sbjct: 182 TAFGVMRY 189 >lin2964 [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 14/191 (7%), Positives = 34/191 (17%), Gaps = 1/191 (0%) Query: 6 FEAAIFDLDGVIVDTAKFHYKAWKRLAGELGFAFSESENEQLKGVSRMESLDLLLRCGG- 64 + + ++ ++ L V+ M + G Sbjct: 5 RIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGL 64 Query: 65 ITDVSPERREALASRKNEWYKELLATLTPADVLPGVRSFLGLLRSQGIQTGIASASKNTP 124 SR+ ++ + + ++ + T Sbjct: 65 TETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTD 124 Query: 125 LIMDKVNIRPLFDAVVDGNSIVRAKPDPEVFLQAARLLGVAPAACFVFEDAAAGVEGALR 184 + P G L +A Sbjct: 125 YLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAF 184 Query: 185 AGMRVVGIGDG 195 MR + + D Sbjct: 185 GVMRYLHLADK 195 >BS_yvdM [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 16/207 (7%), Positives = 36/207 (17%), Gaps = 1/207 (0%) Query: 6 FEAAIFDLDGVIVDTAKFHYKAWKRLAGELGFAFSESENEQLKGVSRMESLDLLLRCGGI 65 + + V T + E + + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 66 -TDVSPERREALASRKNEWYKELLATLTPADVLPGVRSFLGLLRSQGIQTGIASASKNTP 124 ++ ++ K ++A+ + A Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 125 LIMDKVNIRPLFDAVVDGNSIVRAKPDPEVFLQAARLLGVAPAACFVFEDAAAGVEGALR 184 L D +++ + N + A LL A G Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 185 AGMRVVGIGDGRLLARSHLAITSFEQL 211 V I + + Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNP 207 >ZycjU [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 11/191 (5%), Positives = 31/191 (16%), Gaps = 1/191 (0%) Query: 6 FEAAIFDLDGVIVDTAKFHYKAWKRLAGELGFAFSESENEQLKGVSRMESLDLLLRCGGI 65 + V + + + + + + E + R Sbjct: 3 YHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQ 62 Query: 66 T-DVSPERREALASRKNEWYKELLATLTPADVLPGVRSFLGLLRSQGIQTGIASASKNTP 124 + E P+ L + I+ + + K Sbjct: 63 GLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQ 122 Query: 125 LIMDKVNIRPLFDAVVDGNSIVRAKPDPEVFLQAARLLGVAPAACFVFEDAAAGVEGALR 184 + + + + A A Sbjct: 123 TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNET 182 Query: 185 AGMRVVGIGDG 195 A + + Sbjct: 183 AFGVMRYLHLA 193 >ECs1896 [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 11/191 (5%), Positives = 31/191 (16%), Gaps = 1/191 (0%) Query: 6 FEAAIFDLDGVIVDTAKFHYKAWKRLAGELGFAFSESENEQLKGVSRMESLDLLLRCGGI 65 + V + + + + + + E + R Sbjct: 3 YHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQ 62 Query: 66 T-DVSPERREALASRKNEWYKELLATLTPADVLPGVRSFLGLLRSQGIQTGIASASKNTP 124 + E P+ L + I+ + + K Sbjct: 63 GLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQ 122 Query: 125 LIMDKVNIRPLFDAVVDGNSIVRAKPDPEVFLQAARLLGVAPAACFVFEDAAAGVEGALR 184 + + + + A A Sbjct: 123 TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNET 182 Query: 185 AGMRVVGIGDG 195 A + + Sbjct: 183 AFGVMRYLHLA 193 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,030,674 Number of extensions: 681422 Number of successful extensions: 1603 Number of sequences better than 1.0e-05: 84 Number of HSP's gapped: 1533 Number of HSP's successfully gapped: 84 Length of query: 235 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 132 Effective length of database: 26,499,029 Effective search space: 3497871828 Effective search space used: 3497871828 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)