BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0008.p (215 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0174 [TK] COG2197 Response regulator containing a CheY-like r... 283 1e-76 CAC2254 [TK] COG2197 Response regulator containing a CheY-like r... 211 5e-55 CAC0240 [TK] COG2197 Response regulator containing a CheY-like r... 188 5e-48 CAC2939 [TK] COG2197 Response regulator containing a CheY-like r... 185 4e-47 BH1051 [TK] COG2197 Response regulator containing a CheY-like re... 181 5e-46 >CAC0174 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 213 Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 138/215 (64%), Positives = 179/215 (83%), Gaps = 2/215 (0%) Query: 1 MVDIMIVDDQQIVREGLKMILSLHEEINVIGEASNGEEALELLSYTSPEVILMDIKMPVM 60 M+D++IVDDQ+IVREGLKMIL L+ E NVIGEASNG E L LL + SP VILMDI+MPVM Sbjct: 1 MIDVIIVDDQEIVREGLKMILGLNNEFNVIGEASNGAELLTLLEHQSPNVILMDIRMPVM 60 Query: 61 NGIEATKLVKAKYPGIKVIILTTFNDSEYIFTGLKNGADGYILKDSGSQEIISSIKTACE 120 +GIEAT+LVK YP +KVIILTTFN+ E+IF LKNGADGY+LKD+GS+EI +SIK ACE Sbjct: 61 DGIEATRLVKENYPDLKVIILTTFNEDEFIFDVLKNGADGYVLKDAGSKEIFNSIKAACE 120 Query: 121 GNILLNPKITREVVNALNSVNNAGTENLRNEQILQLLTPRELEVAKCIMEGKSNKEISSD 180 G++LLNP++T ++VNALN+++ + L+ + +L LLTPRE++VA +++GKSN+ I+ Sbjct: 121 GSVLLNPQVTLKLVNALNTLDK--KKPLQEKNLLHLLTPREMDVANHVLKGKSNRAIAEA 178 Query: 181 LFITEGTVKNYVSRMLEKLELKNRTELTLCLQKSL 215 LF+TEGT+KNYVS++LEKLEL NR+EL L LQ L Sbjct: 179 LFLTEGTIKNYVSKILEKLELGNRSELILYLQNYL 213 >CAC2254 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 213 Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 109/207 (52%), Positives = 150/207 (72%), Gaps = 3/207 (1%) Query: 1 MVDIMIVDDQQIVREGLKMILSLHEEINVIGEASNGEEALELLSYTSPEVILMDIKMPVM 60 M+ +MI DDQ IVREGLK ILSL +EI VI EA +G + + L ++ILMD++MP M Sbjct: 1 MIRVMIADDQVIVREGLKKILSLDDEIEVICEAEDGYDVINKLREHIVDIILMDVRMPKM 60 Query: 61 NGIEATKLVKAKYPGIKVIILTTFNDSEYIFTGLKNGADGYILKDSGSQEIISSIKTACE 120 +GI+ T LVK +YP I +IILTTF++ EYIF G+K+G GY+LKDS I+ S+K A Sbjct: 61 DGIKTTNLVKKQYPKINIIILTTFDEDEYIFNGIKSGISGYLLKDSEIDYILKSVKEAYN 120 Query: 121 GNILLNPKITREVVNALNSVNNAGTENLRNEQILQLLTPRELEVAKCIMEGKSNKEISSD 180 ++ +P +T ++VNALN NN N N++IL +LT RE+E+ K + GKSNKEIS Sbjct: 121 NKMMFDPVVTPKLVNALNLSNNI---NSTNKEILSVLTEREMEITKLVTSGKSNKEISET 177 Query: 181 LFITEGTVKNYVSRMLEKLELKNRTEL 207 LFI+EGTVKNY+S++L+KL+L+ RT+L Sbjct: 178 LFISEGTVKNYISKILKKLKLQRRTQL 204 >CAC0240 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 208 Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 93/212 (43%), Positives = 141/212 (66%), Gaps = 8/212 (3%) Query: 4 IMIVDDQQIVREGLKMILSLHEEINVIGEASNGEEALELLSYTSPEVILMDIKMPVMNGI 63 ++IVDD ++RE L ++L L +EI +IG +NG+EA + P+++LMDI+MP+M+G+ Sbjct: 3 VLIVDDDALIRESLSILLDLEDEIEIIGTCANGQEAFDFCKNNRPDIVLMDIRMPIMDGV 62 Query: 64 EATKLVKAKYPGIKVIILTTFNDSEYIFTGLKNGADGYILKDSGSQEIISSIKTACEGNI 123 TK++K + IKV+ILTTF D EYI LKNGA+GYILK+ S II S+K GN+ Sbjct: 63 LGTKVIKESFKDIKVVILTTFKDDEYIKEALKNGAEGYILKNQSSDSIIDSLKAVVNGNM 122 Query: 124 LLNPKITREVVNALN-SVNNAGTENLRNEQILQLLTPRELEVAKCIMEGKSNKEISSDLF 182 + + + + N + +N G E LT RE+EV + I +G SNKEI+S L+ Sbjct: 123 VFEQNVAKTISNFIKEDKSNNGLEQYN-------LTEREMEVLRNIGDGLSNKEIASKLY 175 Query: 183 ITEGTVKNYVSRMLEKLELKNRTELTLCLQKS 214 ++EGTV+NY++ +LEKLEL++RT+L + K+ Sbjct: 176 LSEGTVRNYITSLLEKLELRDRTQLAIFYLKN 207 >CAC2939 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 215 Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 89/208 (42%), Positives = 150/208 (72%), Gaps = 4/208 (1%) Query: 2 VDIMIVDDQQIVREGLKMILSLHEEINVIGEASNGEEALELLSYTSPEVILMDIKMPVMN 61 ++++I DD++++R+GLK+IL+ ++EINVIG A NG EA E+ +V+L DI+MPV + Sbjct: 4 INVVIADDEKLIRDGLKIILNANDEINVIGVAENGIEAAEICKREKVDVVLTDIRMPVCD 63 Query: 62 GIEATKLVKAKYPGIKVIILTTFNDSEYIFTGLKNGADGYILKDSGSQEIISSIKTACEG 121 G++ATK++K ++ IKV++LTTF D EYIF +KNGA+GYILKD+ + II ++K+ +G Sbjct: 64 GVKATKIIKNQFSDIKVLVLTTFKDDEYIFEAMKNGANGYILKDTSYEIIIDAVKSVYKG 123 Query: 122 NILLNPKITREVVNALNSVNNAGTENLRNEQILQLLTPRELEVAKCIMEGKSNKEISSDL 181 N+++NP+I ++V+ + + + E + LT R++E+ I G SNKEI+ Sbjct: 124 NVVVNPEIASKMVSGVMKTSPSSNEIKEKYK----LTDRQIEIIIAIGSGLSNKEIAEKQ 179 Query: 182 FITEGTVKNYVSRMLEKLELKNRTELTL 209 ++TEGTVKN+++ +L KLE+++RT++ + Sbjct: 180 YVTEGTVKNHITEILSKLEMRDRTQIAI 207 >BH1051 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 212 Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 92/209 (44%), Positives = 140/209 (66%), Gaps = 5/209 (2%) Query: 1 MVDIMIVDDQQIVREGLKMILSLHEEINVIGEASNGEEALELLSYTSPEVILMDIKMPVM 60 M ++++ +DQ +VR+GLKM++ E ++VI EASNG+EA+E +++LMD++MP Sbjct: 1 MANLLLAEDQHLVRQGLKMMIEQDETLHVIAEASNGQEAVEAYERYLIDLVLMDVRMPSK 60 Query: 61 NGIEATKLVKAKYPGIKVIILTTFNDSEYIFTGLKNGADGYILKDSGSQEIISSIKTACE 120 G+EATK ++A++P K++ILTTF D EY LK GA GY+LKD+ + +I SIK+A Sbjct: 61 TGLEATKEIRARHPEAKILILTTFADDEYALEALKYGACGYLLKDADADRLIHSIKSALN 120 Query: 121 GNILLNPKITREVVNALNSVNNAGTENLRNEQILQLLTPRELEVAKCIMEGKSNKEISSD 180 G + L+ + +V+ L E R + LT REL V K + EGKSN+EI+ Sbjct: 121 GGMSLDDTVAAKVLPRLLHQQTGEVEE-RTAR----LTKRELAVVKLVGEGKSNQEIADA 175 Query: 181 LFITEGTVKNYVSRMLEKLELKNRTELTL 209 LF++ GTVKNY+S+ L+KLEL++RT+L + Sbjct: 176 LFLSVGTVKNYISQALDKLELRDRTQLAI 204 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.133 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,372,844 Number of extensions: 574742 Number of successful extensions: 2754 Number of sequences better than 1.0e-05: 417 Number of HSP's gapped: 2654 Number of HSP's successfully gapped: 417 Length of query: 215 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 113 Effective length of database: 26,614,363 Effective search space: 3007423019 Effective search space used: 3007423019 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 113 (48.1 bits)