BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0002.p (375 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MA1534 [L] COG4584 Transposase and inactivated derivatives 206 3e-53 MA0005 [L] COG4584 Transposase and inactivated derivatives 206 3e-53 MA1579 [L] COG4584 Transposase and inactivated derivatives 206 4e-53 MA1882 [L] COG4584 Transposase and inactivated derivatives 204 2e-52 NMA1882 [L] COG2801 Transposase and inactivated derivatives 204 2e-52 >MA1534 [L] COG4584 Transposase and inactivated derivatives Length = 414 Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 207/372 (55%), Gaps = 16/372 (4%) Query: 1 MRNEEYLTVQEMKQKGMSISRIAQLLGRDRKTIRRWLNGK-PPDKQHHLPNLQKLDPYKD 59 ++ EE+L ++++ +G SIS I++ G R+T+R++L K P+ Q P KLDP+K Sbjct: 2 LKTEEWLLIRDLYSQGFSISEISRRTGYARETVRKYLKKKTAPEPQKRPPKPSKLDPFKP 61 Query: 60 YIYQRMNEGCINAVMLLKEIRHKGYQGEATLLREYMRPLRSQIQAKGGNRREALPGEEAR 119 YI +++ EG AV L +EI+ G+ G T++++++R +R + R E PG +A+ Sbjct: 62 YIQEKLKEGPYTAVRLYREIKEMGFDGGKTIVKDFVREVRPKQGVPAVLRYETKPGVQAQ 121 Query: 120 VDWGEI-TVNLHGIQTKLYLFVMTLEYSQIIYAEFMENQKLETLLNCQLHAMEYFGGVTR 178 VDW E+ TV + G KL+ F M L YS++ Y EF + TL+ C L+A EYFGG T+ Sbjct: 122 VDWAEMGTVEVDGKVKKLFCFNMILGYSRMRYVEFTLSIDTPTLIQCHLNAFEYFGGFTQ 181 Query: 179 HVIYENLRSVS-----SGLDSQGRIVWNRRLIQFAGHYHFMMGFYGSRFNSSRG--ERGI 231 ++Y+N++ V DS+ WN + +F + F+ ++G E + Sbjct: 182 EILYDNMKQVVIKRALKSSDSE----WNPQFEEFFKCFGFIPRLCRPYRPQTKGKIENTV 237 Query: 232 RFVKRNFRVNEYTFTQLGEMNDKVWDWMDDMANKSVHEASAERLVDRLAREELQQINR-D 290 FVKR+F + FT L ++N +V W++ + N +VH + + ++R E+L +++ Sbjct: 238 GFVKRDFFLGR-RFTSLEDLNAQVHRWLERV-NSTVHGTTYQIPLERFKEEKLSPLDQVP 295 Query: 291 RFEIADHHFRKVSNDCLVSYQANHYSVPGHFAGQVVHILEQDGCIRVFHGTQEIAVHQKA 350 +++ RKVS DC +S+ N YSVP FAG+ + +G V+ +++ H+ Sbjct: 296 PYKVVHKETRKVSRDCYISFLGNKYSVPYRFAGRTAELQILEGIFEVYVDYEKVCEHEIL 355 Query: 351 FGKQQIFRQEEH 362 G ++ R++EH Sbjct: 356 PGNCRVSRKKEH 367 >MA0005 [L] COG4584 Transposase and inactivated derivatives Length = 414 Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 207/372 (55%), Gaps = 16/372 (4%) Query: 1 MRNEEYLTVQEMKQKGMSISRIAQLLGRDRKTIRRWLNGK-PPDKQHHLPNLQKLDPYKD 59 ++ EE+L ++++ +G SIS I++ G R+T+R++L K P+ Q P KLDP+K Sbjct: 2 LKTEEWLLIRDLYSQGFSISEISRRTGYARETVRKYLKKKTAPEPQKRPPKPSKLDPFKP 61 Query: 60 YIYQRMNEGCINAVMLLKEIRHKGYQGEATLLREYMRPLRSQIQAKGGNRREALPGEEAR 119 YI +++ EG AV L +EI+ G+ G T++++++R +R + R E PG +A+ Sbjct: 62 YIQEKLKEGPYTAVRLYREIKEMGFDGGKTIVKDFVREVRPKQGVPAVLRYETKPGVQAQ 121 Query: 120 VDWGEI-TVNLHGIQTKLYLFVMTLEYSQIIYAEFMENQKLETLLNCQLHAMEYFGGVTR 178 VDW E+ TV + G KL+ F M L YS++ Y EF + TL+ C L+A EYFGG T+ Sbjct: 122 VDWAEMGTVEVDGKVKKLFCFNMILGYSRMRYVEFTLSIDTPTLIQCHLNAFEYFGGFTQ 181 Query: 179 HVIYENLRSVS-----SGLDSQGRIVWNRRLIQFAGHYHFMMGFYGSRFNSSRG--ERGI 231 ++Y+N++ V DS+ WN + +F + F+ ++G E + Sbjct: 182 EILYDNMKQVVIKRALKSSDSE----WNPQFEEFFKCFGFIPRLCRPYRPQTKGKIENTV 237 Query: 232 RFVKRNFRVNEYTFTQLGEMNDKVWDWMDDMANKSVHEASAERLVDRLAREELQQINR-D 290 FVKR+F + FT L ++N +V W++ + N +VH + + ++R E+L +++ Sbjct: 238 GFVKRDFFLGR-RFTSLEDLNAQVHRWLERV-NSTVHGTTYQIPLERFKEEKLSPLDQVP 295 Query: 291 RFEIADHHFRKVSNDCLVSYQANHYSVPGHFAGQVVHILEQDGCIRVFHGTQEIAVHQKA 350 +++ RKVS DC +S+ N YSVP FAG+ + +G V+ +++ H+ Sbjct: 296 PYKVVHKETRKVSRDCYISFLGNKYSVPYRFAGRTAELQILEGIFEVYVDYEKVCEHEIL 355 Query: 351 FGKQQIFRQEEH 362 G ++ R++EH Sbjct: 356 PGNCRVSRKKEH 367 >MA1579 [L] COG4584 Transposase and inactivated derivatives Length = 414 Score = 206 bits (525), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 205/372 (55%), Gaps = 16/372 (4%) Query: 1 MRNEEYLTVQEMKQKGMSISRIAQLLGRDRKTIRRWLNGK-PPDKQHHLPNLQKLDPYKD 59 ++ EE+L ++++ +G SIS I++ G R+T+R++L K P+ Q P KLDP+K Sbjct: 2 LKTEEWLLIRDLYSQGFSISEISRRTGYARETVRKYLKKKTAPEPQKRPPKPSKLDPFKP 61 Query: 60 YIYQRMNEGCINAVMLLKEIRHKGYQGEATLLREYMRPLRSQIQAKGGNRREALPGEEAR 119 YI +++ EG AV L +EI+ G+ G T++++++R +R + R E PG +A+ Sbjct: 62 YIQEKLKEGPYTAVRLYREIKEMGFDGGKTIVKDFVREVRPKQGVPAVLRYETKPGVQAQ 121 Query: 120 VDWGEI-TVNLHGIQTKLYLFVMTLEYSQIIYAEFMENQKLETLLNCQLHAMEYFGGVTR 178 VDW E+ TV + G KL+ F M L YS++ Y EF + TL+ C L+A EYFGG T+ Sbjct: 122 VDWAEMGTVEVDGKVKKLFCFNMILGYSRMRYVEFTLSIDTPTLIQCHLNAFEYFGGFTQ 181 Query: 179 HVIYENLRSVS-----SGLDSQGRIVWNRRLIQFAGHYHFMMGFYGSRFNSSRG--ERGI 231 ++Y+N++ V DS+ WN + F + F+ ++G E + Sbjct: 182 EILYDNMKQVVIKRALKSSDSE----WNPQFEDFFKCFGFIPRLCRPYRPQTKGKIENTV 237 Query: 232 RFVKRNFRVNEYTFTQLGEMNDKVWDWMDDMANKSVHEASAERLVDRLAREELQQINR-D 290 FVKR+F + FT L ++N +V W+ + N +VH + + ++R E+L +++ Sbjct: 238 GFVKRDFFLGR-RFTSLEDLNAQVHSWL-EWVNSTVHGTTYQIPLERFKEEKLSPLDQVP 295 Query: 291 RFEIADHHFRKVSNDCLVSYQANHYSVPGHFAGQVVHILEQDGCIRVFHGTQEIAVHQKA 350 +++ RKVS DC +S+ N YSVP FAG+ + +G V+ +++ H+ Sbjct: 296 PYKVVHKETRKVSRDCYISFLGNKYSVPYRFAGRTAELQILEGIFEVYVDYEKVCEHEIL 355 Query: 351 FGKQQIFRQEEH 362 G ++ R++EH Sbjct: 356 PGNCRVSRKKEH 367 >MA1882 [L] COG4584 Transposase and inactivated derivatives Length = 414 Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/372 (31%), Positives = 206/372 (55%), Gaps = 16/372 (4%) Query: 1 MRNEEYLTVQEMKQKGMSISRIAQLLGRDRKTIRRWLNGK-PPDKQHHLPNLQKLDPYKD 59 ++ EE+L+++++ +G SIS I++ G R+T+R++L K P+ Q P KLDP+K Sbjct: 2 LKTEEWLSIRDLYSQGFSISEISRRTGYARETVRKYLKKKTAPEPQKRPPKPSKLDPFKP 61 Query: 60 YIYQRMNEGCINAVMLLKEIRHKGYQGEATLLREYMRPLRSQIQAKGGNRREALPGEEAR 119 YI +++ EG AV L +EI+ G+ G T++++++R +R + R E PG +A+ Sbjct: 62 YIQEKLKEGPYTAVRLYREIKEMGFDGGKTIVKDFVREVRPKQGVPAVLRYETKPGVQAQ 121 Query: 120 VDWGEI-TVNLHGIQTKLYLFVMTLEYSQIIYAEFMENQKLETLLNCQLHAMEYFGGVTR 178 VDW E+ TV + G KL+ F M L YS++ Y EF TL+ C L+A EYFGG T+ Sbjct: 122 VDWAEMGTVEVDGKIKKLFCFNMILGYSRMKYVEFTLGIDTSTLIQCHLNAFEYFGGFTQ 181 Query: 179 HVIYENLRSVS-----SGLDSQGRIVWNRRLIQFAGHYHFMMGFYGSRFNSSRG--ERGI 231 ++Y+N++ V DS+ WN + F + F+ ++G E + Sbjct: 182 EILYDNMKQVVIKRALKSSDSE----WNSQFEDFFKCFGFIPRLCRPYRPQTKGKIENTV 237 Query: 232 RFVKRNFRVNEYTFTQLGEMNDKVWDWMDDMANKSVHEASAERLVDRLAREELQQINR-D 290 +VKR+F + FT L ++N +V W++ + N +VH + + ++R E+L +++ Sbjct: 238 GYVKRDFFLGR-RFTSLEDLNAQVHRWLERV-NSTVHGTTYQIPLERFKEEKLIPLDQVP 295 Query: 291 RFEIADHHFRKVSNDCLVSYQANHYSVPGHFAGQVVHILEQDGCIRVFHGTQEIAVHQKA 350 +++ RKVS DC +S+ N YSVP FAG+ + +G V+ +++ H+ Sbjct: 296 PYKVVHKETRKVSRDCYISFLGNKYSVPYRFAGRTAELQILEGIFEVYVDYEKVCEHEIL 355 Query: 351 FGKQQIFRQEEH 362 G ++ R++EH Sbjct: 356 PGNCRVSRKKEH 367 >NMA1882 [L] COG2801 Transposase and inactivated derivatives Length = 414 Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/372 (31%), Positives = 206/372 (55%), Gaps = 16/372 (4%) Query: 1 MRNEEYLTVQEMKQKGMSISRIAQLLGRDRKTIRRWLNGK-PPDKQHHLPNLQKLDPYKD 59 ++ EE+L+++++ +G SIS I++ G R+T+R++L K P+ Q P KLDP+K Sbjct: 2 LKTEEWLSIRDLYSQGFSISEISRRTGYARETVRKYLKKKTAPEPQKRPPKPSKLDPFKP 61 Query: 60 YIYQRMNEGCINAVMLLKEIRHKGYQGEATLLREYMRPLRSQIQAKGGNRREALPGEEAR 119 YI +++ EG AV L +EI+ G+ G T++++++R +R + R E PG +A+ Sbjct: 62 YIQEKLKEGPYTAVRLYREIKEMGFDGGKTIVKDFVREVRPKQGVPAVLRYETKPGVQAQ 121 Query: 120 VDWGEI-TVNLHGIQTKLYLFVMTLEYSQIIYAEFMENQKLETLLNCQLHAMEYFGGVTR 178 VDW E+ TV + G KL+ F M L YS++ Y EF TL+ C L+A EYFGG T+ Sbjct: 122 VDWAEMGTVEVDGKIKKLFCFNMILGYSRMKYVEFTLGIDTSTLIQCHLNAFEYFGGFTQ 181 Query: 179 HVIYENLRSVS-----SGLDSQGRIVWNRRLIQFAGHYHFMMGFYGSRFNSSRG--ERGI 231 ++Y+N++ V DS+ WN + F + F+ ++G E + Sbjct: 182 EILYDNMKQVVIKRALKSSDSE----WNSQFEDFFKCFGFIPRLCRPYRPQTKGKIENTV 237 Query: 232 RFVKRNFRVNEYTFTQLGEMNDKVWDWMDDMANKSVHEASAERLVDRLAREELQQINR-D 290 +VKR+F + FT L ++N +V W++ + N +VH + + ++R E+L +++ Sbjct: 238 GYVKRDFFLGR-RFTSLEDLNAQVHRWLERV-NSTVHGTTYQIPLERFKEEKLIPLDQVP 295 Query: 291 RFEIADHHFRKVSNDCLVSYQANHYSVPGHFAGQVVHILEQDGCIRVFHGTQEIAVHQKA 350 +++ RKVS DC +S+ N YSVP FAG+ + +G V+ +++ H+ Sbjct: 296 PYKVVHKETRKVSRDCYISFLGNKYSVPYRFAGRTAELQILEGIFEVYVDYEKVCEHEIL 355 Query: 351 FGKQQIFRQEEH 362 G ++ R++EH Sbjct: 356 PGNCRVSRKKEH 367 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 27,571,444 Number of extensions: 1092399 Number of successful extensions: 1973 Number of sequences better than 1.0e-05: 48 Number of HSP's gapped: 1883 Number of HSP's successfully gapped: 48 Length of query: 375 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 267 Effective length of database: 25,922,359 Effective search space: 6921269853 Effective search space used: 6921269853 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 117 (49.7 bits)