BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0056.p (547 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein 216 8e-56 BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein 215 2e-55 BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein 214 3e-55 BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein 213 7e-55 BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein 203 5e-52 >BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 216 bits (550), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 0/341 (0%), Positives = 0/341 (0%), Gaps = 1/341 (0%) Query: 206 DGDLTVNEIQIKNKDELGDLAGAFNQMAGNLRHLIQEIGTHAEQVAASAEELTAGAEQTS 265 Sbjct: 321 - 379 Query: 266 QATEHIAHITEDLAQGTEQQVESISGSMKMVHRMEEQAIFIEQSAYNVNQSAINASQIVV 325 Sbjct: 380 439 Query: 326 QGSDAVRSAISQMSSIQANSNEVAESVKSLGEKSKEISTIINFINEIAGQTNLLSLNASI 385 Sbjct: 440 499 Query: 386 EAARAGESGRGFAVVASEVKKLADQTAMSGKQISEVIKNIQLESEISVNNVLKGEEEVLL 445 Sbjct: 500 559 Query: 446 GIRSVTEAGKAFEQIELAMSGVTAEISEVSSASKEMSDDTKNLVTSFEAISVIVNETSEG 505 Sbjct: 560 619 Query: 506 TQSVSASAQETLATVEEVNSASTALAKMSEELLELAGKFKI 546 Sbjct: 620 660 >BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 215 bits (547), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 0/340 (0%), Positives = 0/340 (0%), Gaps = 1/340 (0%) Query: 207 GDLTVNEIQIKNKDELGDLAGAFNQMAGNLRHLIQEIGTHAEQVAASAEELTAGAEQTSQ 266 Sbjct: 322 - 380 Query: 267 ATEHIAHITEDLAQGTEQQVESISGSMKMVHRMEEQAIFIEQSAYNVNQSAINASQIVVQ 326 Sbjct: 381 440 Query: 327 GSDAVRSAISQMSSIQANSNEVAESVKSLGEKSKEISTIINFINEIAGQTNLLSLNASIE 386 Sbjct: 441 500 Query: 387 AARAGESGRGFAVVASEVKKLADQTAMSGKQISEVIKNIQLESEISVNNVLKGEEEVLLG 446 Sbjct: 501 560 Query: 447 IRSVTEAGKAFEQIELAMSGVTAEISEVSSASKEMSDDTKNLVTSFEAISVIVNETSEGT 506 Sbjct: 561 620 Query: 507 QSVSASAQETLATVEEVNSASTALAKMSEELLELAGKFKI 546 Sbjct: 621 660 >BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 662 Score = 214 bits (545), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 135/340 (39%), Positives = 216/340 (63%), Gaps = 1/340 (0%) Query: 207 GDLTVNEIQIKNKDELGDLAGAFNQMAGNLRHLIQEIGTHAEQVAASAEELTAGAEQTSQ 266 GDLT I+I +KDELG+L +FN+M +LR LI I VAAS+E+LTA A QTS+ Sbjct: 323 GDLT-ETIEIHSKDELGELGESFNEMGQSLRSLISAIQNSVNNVAASSEQLTASAGQTSK 381 Query: 267 ATEHIAHITEDLAQGTEQQVESISGSMKMVHRMEEQAIFIEQSAYNVNQSAINASQIVVQ 326 ATEHI E + G E+Q + S ++ M E + Q++ ++ +++I +++I Sbjct: 382 ATEHITMAIEQFSNGNEEQSRKVESSSHQLNLMNEGLQQVSQTSSDITKASIQSTEIAGT 441 Query: 327 GSDAVRSAISQMSSIQANSNEVAESVKSLGEKSKEISTIINFINEIAGQTNLLSLNASIE 386 G V+ QM+SI + + VK L KSK+I++I+ IN IA QTNLL+LNA+IE Sbjct: 442 GEKFVQQTGGQMNSINQSVQQAEAVVKGLEGKSKDITSILRVINGIADQTNLLALNAAIE 501 Query: 387 AARAGESGRGFAVVASEVKKLADQTAMSGKQISEVIKNIQLESEISVNNVLKGEEEVLLG 446 AARAGESGRGF+VVA EV+KLA Q+A S K+I ++I+ I E + S++ + +EV G Sbjct: 502 AARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKLIQEIVAEIDTSLHMFKEVNQEVQSG 561 Query: 447 IRSVTEAGKAFEQIELAMSGVTAEISEVSSASKEMSDDTKNLVTSFEAISVIVNETSEGT 506 + ++F+ I + + ++ ++S +++SD ++++ + I+ + E+S Sbjct: 562 LVVTDNTKESFQSIFSMTNEIAGKLQTMNSTVEQLSDRSQHVSAAVSGIADVSKESSASI 621 Query: 507 QSVSASAQETLATVEEVNSASTALAKMSEELLELAGKFKI 546 Q ++ASA+E LA++EE++S++T LA+M+EEL +L +FKI Sbjct: 622 QDIAASAEEQLASMEEISSSATTLAQMAEELRDLTKQFKI 661 >BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 661 Score = 213 bits (542), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 134/341 (39%), Positives = 212/341 (62%), Gaps = 1/341 (0%) Query: 206 DGDLTVNEIQIKNKDELGDLAGAFNQMAGNLRHLIQEIGTHAEQVAASAEELTAGAEQTS 265 +GDLT I I++KDELG+L +FN MA +LR LI I + VAAS+EELTA A QTS Sbjct: 321 EGDLT-ETIDIRSKDELGELGKSFNNMASSLRSLIHAIQDSVDNVAASSEELTASAAQTS 379 Query: 266 QATEHIAHITEDLAQGTEQQVESISGSMKMVHRMEEQAIFIEQSAYNVNQSAINASQIVV 325 +ATEHI E + G E+Q E+I + + +++M + + Q++ + S++ +++I Sbjct: 380 KATEHITLAIEQFSNGNEKQNENIETAAEHIYQMNDGLTNMAQASEVITDSSVQSTEIAS 439 Query: 326 QGSDAVRSAISQMSSIQANSNEVAESVKSLGEKSKEISTIINFINEIAGQTNLLSLNASI 385 +G V + QM+ I + E + V+ L KSK+I+ I+ IN IA QTNLL+LNA+I Sbjct: 440 EGGKLVHQTVGQMNVIDKSVKEAEQVVRGLETKSKDITNILRVINGIADQTNLLALNAAI 499 Query: 386 EAARAGESGRGFAVVASEVKKLADQTAMSGKQISEVIKNIQLESEISVNNVLKGEEEVLL 445 EAARAGE GRGF+VVA EV+KLA Q+A S K+I +I I E S+ +EV Sbjct: 500 EAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIIEIVKEINTSLGMFQSVNQEVQT 559 Query: 446 GIRSVTEAGKAFEQIELAMSGVTAEISEVSSASKEMSDDTKNLVTSFEAISVIVNETSEG 505 G+ + +F++I + + E+ +S+ +++S ++ + + E I+ I E+S Sbjct: 560 GLDITDKTEMSFKRISEMTNQIAGELQNMSATVQQLSASSEEVSGASEHIASISKESSAH 619 Query: 506 TQSVSASAQETLATVEEVNSASTALAKMSEELLELAGKFKI 546 Q ++ASA+E LA++EE++S++ L+ M+EEL ++ +FKI Sbjct: 620 IQDIAASAEEQLASMEEISSSAETLSSMAEELRDMTKRFKI 660 >BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 359 Score = 203 bits (517), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 124/341 (36%), Positives = 213/341 (62%) Query: 206 DGDLTVNEIQIKNKDELGDLAGAFNQMAGNLRHLIQEIGTHAEQVAASAEELTAGAEQTS 265 DGDLT ++IKN+DE+G L +F M NLR LIQ I +A+QVA S+E+L+A AEQTS Sbjct: 19 DGDLTTERVKIKNRDEIGQLNESFEAMKENLRGLIQRILQNADQVAVSSEQLSASAEQTS 78 Query: 266 QATEHIAHITEDLAQGTEQQVESISGSMKMVHRMEEQAIFIEQSAYNVNQSAINASQIVV 325 ATE E +++G + Q + S+K + M + + A + +A Sbjct: 79 SATEQTTSAIESISRGADMQTSAAQTSVKTLEEMNQIVTEMTDGAKQIESNANLTLTYAN 138 Query: 326 QGSDAVRSAISQMSSIQANSNEVAESVKSLGEKSKEISTIINFINEIAGQTNLLSLNASI 385 +G V+ + M SI + +++++L ++S++I I++ I IA QTNLL+LNA+I Sbjct: 139 EGDTLVKETVENMQSIDESVKGSDQAIQTLSKRSEDIVEILDVIQSIAEQTNLLALNAAI 198 Query: 386 EAARAGESGRGFAVVASEVKKLADQTAMSGKQISEVIKNIQLESEISVNNVLKGEEEVLL 445 EAARAGE G+GFAVVA EV+KLA++++ S K+I ++I + E+ SV + +EEV + Sbjct: 199 EAARAGEHGKGFAVVAEEVRKLAEESSQSTKKIHDLIDEMVKETNNSVEKMGLVKEEVSV 258 Query: 446 GIRSVTEAGKAFEQIELAMSGVTAEISEVSSASKEMSDDTKNLVTSFEAISVIVNETSEG 505 G+++ + + F I ++ GVT+++ ++ ++E+++ + + TS + ++ + E++E Sbjct: 259 GLKTAAQTSEKFHSIVASIQGVTSQVEAMNRVTREVAEKSTEVATSVQNMASVAEESAEQ 318 Query: 506 TQSVSASAQETLATVEEVNSASTALAKMSEELLELAGKFKI 546 + SVSA A+ETLA+++EV +++ L +M+E L E +FK+ Sbjct: 319 SSSVSAVAEETLASMQEVTASANQLTEMAETLQEAIKQFKL 359 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.308 0.124 0.309 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,424,687 Number of extensions: 961541 Number of successful extensions: 9678 Number of sequences better than 1.0e-05: 805 Number of HSP's gapped: 4006 Number of HSP's successfully gapped: 814 Length of query: 547 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 436 Effective length of database: 25,576,357 Effective search space: 11151291652 Effective search space used: 11151291652 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 118 (50.1 bits)