BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0490.0050.p
         (301 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1691 [KT] COG1221 Transcriptional regulators containing an AA...   109   5e-24
aq_771 [S] COG1561 Uncharacterized stress-induced protein              72   1e-12
aq_770 [S] COG1561 Uncharacterized stress-induced protein              52   1e-06

>STM1691 [KT] COG1221 Transcriptional regulators containing an AAA-type
           ATPase domain and a DNA-binding domain
          Length = 326

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 18/296 (6%), Positives = 49/296 (16%), Gaps = 10/296 (3%)

Query: 9   SMTGYGQSSLQFCGYKITFEVKSVNNRYCEVVLRMPRDWTVYEDMLRRQVQAHIKRGRVD 68
                   + +F          +  ++   ++        +  + L              
Sbjct: 4   FKDNLLGEANRFLEVLEQVSRLAPLDKPVLIIGERGTGKELIANRLHYLSSRWQGPLISL 63

Query: 69  VIINREHADEADSAQVLNRSAVRSYLKSAQQLREEFGITGELQLRDILALPGVMELKEDV 128
                            + +   +  +             E      L L  +      V
Sbjct: 64  NCAALNENLLDSELFG-HEAGAFTGAQKRHP------GRFERADGGTLFLDELATAPMLV 116

Query: 129 QALASSQDLKDT---LELGLHQSLEALMDMRAREGGFLAADLLGRLNHLEELHAEMAVLA 185
           Q              +       +   +                    L +  A   V  
Sbjct: 117 QEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVKEGTFRADLLDRLAFDVVQL 176

Query: 186 PFVVSEYREKLRQRLTLLNDGTFPFEEHKFGMEMAIFADRCNIDEELTRLYSHFEQCKAV 245
           P +     + +                  F        +          +       +  
Sbjct: 177 PPLRERQSDIMLMAEHFAIQMCRELRLPLFPGFTDRAKETLLHYAWPGNVRELKNVVERS 236

Query: 246 LTSSEPAGRKLDFLVQEMNRETNTIGSKCNHLTLVNLTLDMKAELEKIREQAANLE 301
           +     + + LD +V +  +                         E   +Q   L 
Sbjct: 237 VYRHGSSEQPLDEIVIDPFQRHPAEPPAPALPAASVTPDLPLKLREFQLQQEKALL 292


>aq_771 [S] COG1561 Uncharacterized stress-induced protein
          Length = 119

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 72/112 (64%), Gaps = 3/112 (2%)

Query: 191 EYREKLRQRLTLLNDGTFPFEEHKFGM-EMAIFADRCNIDEELTRLYSHFEQCKAVLTSS 249
           E++E++++R+          EEH   + E+    ++ +++EE+ RL +H E+ K +L S 
Sbjct: 10  EFKERIKERVLERAKALNLPEEHPTVLNELMFLLEKYDVNEEVQRLKAHVERFKKLLESE 69

Query: 250 EPAGRKLDFLVQEMNRETNTIGSKCNHLTLVNLTLDMKAELEKIREQAANLE 301
              G+KL+FL QEM+RE  T+G+K    +    T+++KAE++KI++QAAN+E
Sbjct: 70  GEVGKKLEFLAQEMHREITTLGNKIPDFS--EYTVEVKAEIDKIKQQAANVE 119


>aq_770 [S] COG1561 Uncharacterized stress-induced protein
          Length = 152

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 8/156 (5%)

Query: 8   FSMTGYGQSSLQFCGYKITFEVKSVNNRYCEVVLRMPRDWTVYEDMLRRQVQAHIKRGRV 67
           FSMTG+G+   +   +K+T  ++S+N +  +V LRMP      E  L+ +++ H++RG V
Sbjct: 2   FSMTGFGKGEAESENWKVTVMMRSLNGKGLDVSLRMPPFLMPMELELKNEIKKHLRRGTV 61

Query: 68  DVIINREHADEADSAQVLNRSAVRSYLKSAQQLREEFGITGELQLRDILALPGVMELKED 127
            V I+ E        +V+        LK+  ++  E   +  L   D   L       E 
Sbjct: 62  TVYIDLEQ-------KVVKPPIDVEKLKANVEMLRELSNSVGLSPTDDKILDYAWRYSEK 114

Query: 128 VQALASSQDLKDTLELGLHQSLEALMDMRAREGGFL 163
            + +   ++LK+ +   L ++++ L++ R +EG  L
Sbjct: 115 AE-IELDEELKNVVMEALRKAIQELLESRKKEGEHL 149


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 20,342,211
Number of extensions: 799581
Number of successful extensions: 1360
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1357
Number of HSP's successfully gapped: 3
Length of query: 301
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 195
Effective length of database: 26,153,027
Effective search space: 5099840265
Effective search space used: 5099840265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)