BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0490.0048.p
         (185 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC1718 [F] COG0194 Guanylate kinase                                  205   3e-53
CAC1217 [F] COG0194 Guanylate kinase                                   50   2e-06

>CAC1718 [F] COG0194 Guanylate kinase
          Length = 209

 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/184 (53%), Positives = 132/184 (71%), Gaps = 1/184 (0%)

Query: 1   LLIILSGPSGVGKGTVCTALRPKMPELVYSVSATTRQPREGEENGVNYFFKTREQFAAMI 60
           LLI++SGPSG GKGT+C AL  K  +   SVSATTR+PRE E  G +Y+F T ++F + I
Sbjct: 6   LLIVISGPSGAGKGTICKALM-KEQQFWLSVSATTREPREKEVEGKSYYFLTVDEFKSKI 64

Query: 61  EADQLLEYAEYVGNYYGTPRDFVERTLDSGRDIILEIEVQGALKVKEKFPEGIFVFLLPP 120
             D  LEYAE  GNYYGTP+  V   +D+G ++ILEI++QGALKVKE +PEG+F+F+LPP
Sbjct: 65  SEDGFLEYAEVYGNYYGTPKKSVCEKIDNGENVILEIDIQGALKVKENYPEGVFIFILPP 124

Query: 121 SMDELKDRIRGRGTEHPDVISHRMSVAEDEISLIRHYDYAVVNDEIDLACKRIESIIIAE 180
           SM+ELK RI GRG+E    +  R   A  EI+ +  Y+YA++ND ++ A  +I SII+AE
Sbjct: 125 SMEELKKRIIGRGSETEKSLMTRFKSAYKEINYVSKYNYAIINDTVENAVTKINSIIVAE 184

Query: 181 HCKV 184
            C+V
Sbjct: 185 KCRV 188


>CAC1217 [F] COG0194 Guanylate kinase
          Length = 195

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 1  LLIILSGPSGVGKGTVCTALRPKMPELVYSVSATTRQPREGEENGVNYFFKTREQFAAMI 60
          +LI L G S VGK TV   L      +   +S TTR  REGE+ G  Y F T ++F   +
Sbjct: 1  MLIALMGGSCVGKDTVLKMLYAATG-IRICISNTTRTIREGEQQGKEYNFITEKEFLHGL 59

Query: 61 EADQLLEYAEYVGN----YYGTPR 80
            DQ +EY +Y       YYG P+
Sbjct: 60 SLDQYVEYRKYKTKEGIWYYGLPK 83


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.139    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,917,362
Number of extensions: 576872
Number of successful extensions: 2536
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2535
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 85
Effective length of database: 26,845,031
Effective search space: 2281827635
Effective search space used: 2281827635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)