BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0036.p (225 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1932 [G] COG0036 Pentose-5-phosphate-3-epimerase 221 9e-58 lin2808 [G] COG0036 Pentose-5-phosphate-3-epimerase 213 1e-55 SMc00511 [G] COG0036 Pentose-5-phosphate-3-epimerase 201 1e-51 mlr4760 [G] COG0036 Pentose-5-phosphate-3-epimerase 195 4e-50 SMb20195 [G] COG0036 Pentose-5-phosphate-3-epimerase 194 9e-50 >lin1932 [G] COG0036 Pentose-5-phosphate-3-epimerase Length = 301 Score = 221 bits (562), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 11/208 (5%), Positives = 34/208 (16%), Gaps = 4/208 (1%) Query: 1 MITIAPSILSXXXXXXXXXXXXXXXXKASGGDWIHVDVMDGHFVPNITLGPPIVKAVKAH 60 M + + + I Sbjct: 1 MSIDKSYCGFIAIVGRPNVGKST---LLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ 57 Query: 61 TSLPLDVHLMIENPERYIPEFAASGANVITVHAEACVHLHRVVHQIKELGLLAGVAINPG 120 L +E + ++ I + + +L + Sbjct: 58 AIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKA 117 Query: 121 TPASAVREVLEDVDMVLVMTVNPGFGGQSFIPHTLKKIRQIREWAREVNHTSLRIEVDGG 180 AV +V + ++ Q + + +R + Sbjct: 118 PVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDT-IAAIVRKHLPEA 176 Query: 181 IAEATAPLVAEAGADVLVAGNAVFGRSD 208 + + + + Sbjct: 177 THHFPEDYITDRSQRFMASEIIREKLMR 204 >lin2808 [G] COG0036 Pentose-5-phosphate-3-epimerase Length = 301 Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 11/208 (5%), Positives = 35/208 (16%), Gaps = 4/208 (1%) Query: 1 MITIAPSILSXXXXXXXXXXXXXXXXKASGGDWIHVDVMDGHFVPNITLGPPIVKAVKAH 60 M + + + I Sbjct: 1 MSIDKSYCGFIAIVGRPNVGKST---LLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ 57 Query: 61 TSLPLDVHLMIENPERYIPEFAASGANVITVHAEACVHLHRVVHQIKELGLLAGVAINPG 120 L +E + ++ I + + +L + Sbjct: 58 AIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKA 117 Query: 121 TPASAVREVLEDVDMVLVMTVNPGFGGQSFIPHTLKKIRQIREWAREVNHTSLRIEVDGG 180 AV +V + ++ Q + + + +R + Sbjct: 118 PVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN-VDTIAAIVRKHLPEA 176 Query: 181 IAEATAPLVAEAGADVLVAGNAVFGRSD 208 + + + + Sbjct: 177 THHFPEDYITDRSQRFMASEIIREKLMR 204 >SMc00511 [G] COG0036 Pentose-5-phosphate-3-epimerase Length = 226 Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 104/203 (51%), Positives = 136/203 (66%), Gaps = 6/203 (2%) Query: 2 ITIAPSILSXXXXXXXXXXXXXXXXKASGGDWIHVDVMDGHFVPNITLGPPIVKAVKAHT 61 I IAPSIL+ +G DWIH+DVMDGHFVPNIT GP ++K+++ HT Sbjct: 6 IRIAPSILAADFSKLGQEVRDVAE---AGADWIHLDVMDGHFVPNITFGPDVIKSLRPHT 62 Query: 62 SLPLDVHLMIENPERYIPEFAASGANVITVHAEACVHLHRVVHQIKELGLLAGVAINPGT 121 D HLMI + ++ FA +G ++ITVHAEA HLHR + +K LG AGV+INP T Sbjct: 63 RATFDCHLMIAPADPFLEAFAKAGCDIITVHAEAGPHLHRSLQTVKSLGKKAGVSINPAT 122 Query: 122 PASAVREVLEDVDMVLVMTVNPGFGGQSFIPHTLKKIRQIREWAREVNHTSLRIEVDGGI 181 P SA+ VL+ VD++LVMTVNPGFGGQ F+ T +KIR+I+ + + IEVDGGI Sbjct: 123 PESAIEYVLDTVDLILVMTVNPGFGGQKFVGATEEKIRRIKAM---IGSRPIEIEVDGGI 179 Query: 182 AEATAPLVAEAGADVLVAGNAVF 204 A TA + A+AGA+VLVAG+A+F Sbjct: 180 APDTAGVAAKAGANVLVAGSAIF 202 >mlr4760 [G] COG0036 Pentose-5-phosphate-3-epimerase Length = 301 Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 12/173 (6%), Positives = 30/173 (17%), Gaps = 3/173 (1%) Query: 32 DWIHVDVMDGHFVPNITLGPPIVKAVKAHTSLPLDVHLMIENPERYIPEFAASGANVITV 91 I + P R + + A+S + + Sbjct: 32 KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVEL 91 Query: 92 HAEACVHLHRVVHQIKELGLLAGVAINPGTPASAVREVLEDVDMVLVMTVNPGFGGQSFI 151 L L + V V E D++ + I Sbjct: 92 VIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDI 151 Query: 152 PHTLKKIRQIREWAREVNHTSLRIEVDGGIAEATAPLVAEAGADVLVAGNAVF 204 + + + + + + + + Sbjct: 152 VPISAETGLNVDT---IAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREK 201 >SMb20195 [G] COG0036 Pentose-5-phosphate-3-epimerase Length = 228 Score = 194 bits (493), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 104/201 (51%), Positives = 135/201 (67%), Gaps = 6/201 (2%) Query: 4 IAPSILSXXXXXXXXXXXXXXXXKASGGDWIHVDVMDGHFVPNITLGPPIVKAVKAHTSL 63 IAPS+LS +G DWIH+DVMDGHFVPNIT GPP++KA++ T Sbjct: 7 IAPSVLSADFSRLGEEVEAVCR---AGADWIHLDVMDGHFVPNITFGPPVIKALRDRTDK 63 Query: 64 PLDVHLMIENPERYIPEFAASGANVITVHAEACVHLHRVVHQIKELGLLAGVAINPGTPA 123 D HLMIE P Y+ FA +G ++ITVHAEA HL R + I+++G AGV++NP TP Sbjct: 64 VFDCHLMIEPPTPYLGAFACAGCDIITVHAEATTHLDRSLQAIRDVGCKAGVSLNPSTPE 123 Query: 124 SAVREVLEDVDMVLVMTVNPGFGGQSFIPHTLKKIRQIREWAREVNHTSLRIEVDGGIAE 183 S + VL+ +D+VL+MTVNPGFGGQ FIP + K+R++R + + IE+DGG+ Sbjct: 124 SVIEYVLDRLDLVLLMTVNPGFGGQDFIPAVVDKVRRVRSM---IGGRPIHIEIDGGVTP 180 Query: 184 ATAPLVAEAGADVLVAGNAVF 204 TAPLVA AGADVLVAG+AVF Sbjct: 181 ETAPLVAAAGADVLVAGSAVF 201 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,025,638 Number of extensions: 593914 Number of successful extensions: 1455 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 1424 Number of HSP's successfully gapped: 19 Length of query: 225 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 122 Effective length of database: 26,499,029 Effective search space: 3232881538 Effective search space used: 3232881538 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)