BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0490.0035.p
         (62 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0255 [R] COG0656 Aldo/keto reductases, related to diketogulon...    54   7e-08
MT3052.2 [J] COG0227 Ribosomal protein L28                             49   2e-06

>STM0255 [R] COG0656 Aldo/keto reductases, related to diketogulonate
          reductase
          Length = 346

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 3/62 (4%), Positives = 9/62 (14%), Gaps = 1/62 (1%)

Query: 1  MSRKCTVTGKKPGSGNHVSHANNRNRRSWGVNVQKVR-ILVNGKPKRVYVSTRALKAGKV 59
            R    + +    G        +N  +                     +     +    
Sbjct: 3  YHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQ 62

Query: 60 ER 61
            
Sbjct: 63 GL 64


>MT3052.2 [J] COG0227 Ribosomal protein L28
          Length = 311

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 5/63 (7%), Positives = 9/63 (14%), Gaps = 2/63 (3%)

Query: 1  MSRKCTVTGKKPGSGNHVSHANNRNRRSWGVNVQKVRILV--NGKPKRVYVSTRALKAGK 58
          M R       +       +        S       +  L            +        
Sbjct: 1  MIRNFFKHLLESLKNLKRNGWMTVAAVSSVTITLVLVGLFLSVILNTSKISNGIENNVRI 60

Query: 59 VER 61
          V  
Sbjct: 61 VAY 63


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.129    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,645,738
Number of extensions: 133542
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 4
Length of query: 62
Length of database: 38,378,431
Length adjustment: 34
Effective length of query: 28
Effective length of database: 34,457,075
Effective search space: 964798100
Effective search space used: 964798100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)