BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0490.0032.p
         (685 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0205 [S] COG2860 Predicted membrane protein                        476   e-134
STM1450 [H] COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase          234   3e-61

>STM0205 [S] COG2860 Predicted membrane protein
          Length = 207

 Score =  476 bits (1225), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 0/655 (0%), Positives = 0/655 (0%), Gaps = 14/655 (2%)

Query: 9   SIEVKQINGVSAQKQNELHAFGVFTVKDLLEYYPFRYDDFRP-RSLSEIKHGDKATLVAK 67
           +  +  +               V   +  +      Y        +         ++  +
Sbjct: 114 TGPLVAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIVHATAFYTFSVPLE 173

Query: 68  VIGIPVLQRFGGKSRLSCKMIAEPWMFTATWFNQHYVR---EQLTAQREIVITGKWDQKR 124
              +                                                        
Sbjct: 174 SASMMG----                                                   229

Query: 125 NAIT----VTDYEFTDRGEGKIGTLQPVYSVGGKITQTWIRKIINQGLQQYGDLIPEILP 180
                                                                       
Sbjct: 230                                                              289

Query: 181 HSIIWKYDFLSRKRAIATIHRPEDTREGQQGRRRMVYEELFLFQLKVQAFRVLNRGRMDG 240
                                                                       
Sbjct: 290 -                                                            348

Query: 241 VVHTVDNATVRTFVRSLPFELTDAQKRVELEILQDMRSPYCMNRLLQGDVGSGKTVLAAI 300
                                                                       
Sbjct: 349                                                              408

Query: 301 ALYATVKSGFQGALMVPTEILAEQHMRSLTKMFEPFGITVGLLTGSVTGRKRKDLLASLQ 360
                                                                       
Sbjct: 409                                                              468

Query: 361 MGMLDIVVGTHALIQEDVFFRGLGMVVTDEQHRFGVNQRSILRRKGYNPDVLTMTATPIP 420
                                                                       
Sbjct: 469                                                              528

Query: 421 RTLAITVFGDMDVSTLSERPKGRVPIMTYWVKPDLMERVLKLVNREVDQGRQAYLICPLI 480
                                                                       
Sbjct: 529                                                              588

Query: 481 EESEKLDVQNAIDLHIQMS-QAFPHYKVGLLHGRMTPGEKDEVMRAFYNNEIQLLXXXXX 539
                                                                       
Sbjct: 589                                                              648

Query: 540 XXXXXXXPNATLMIIMDADRFGLSQLHQLRGRVGRGQHASFCVLVADPKSEIGRERMTAM 599
                                                                       
Sbjct: 649                                                              708

Query: 600 TDTDDGFEVSRRDLELRGPGDFFGTKQSGLPEFRLADMTADFEVLEQARDDAAEL 654
                                                                  
Sbjct: 709                                                         763


>STM1450 [H] COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase
          Length = 286

 Score =  234 bits (598), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 0/403 (0%), Positives = 0/403 (0%), Gaps = 19/403 (4%)

Query: 233 LNRGRMDGVVHTVDNATVRTFVRSLPF-ELTDAQKRVELEILQDMRSPYCMNRLLQGDVG 291
                                                                       
Sbjct: 344 -                                                            402

Query: 292 SGKTVLAAIALYATVKSGFQGALMVPTEILAEQHMRSLTKMFEPFGITVGLLTGSVTGRK 351
                                                                       
Sbjct: 403                                                              462

Query: 352 RKDLLASLQMGMLDIVVGTHALIQEDVFFRGLGMVVTDEQHRFGVNQRSILRRKGYNPDV 411
                                                                       
Sbjct: 463                                                              522

Query: 412 LTMTATPIPRTLAITVFGDMDVSTLSERPKGRVPIMTYWVK--PDLMERVLKLVNREVDQ 469
                                                                       
Sbjct: 523 ---                                                          579

Query: 470 GRQAYLICPLIEESEKLDVQNAIDLHIQMSQAFPHYKVGLLHGRMTPGEKDEVMRAFYNN 529
                                                                       
Sbjct: 580 --------                                                     631

Query: 530 EIQLLXXXXXXXXXXXXPNATLMIIMDADRFGLSQLHQLRGRVGRGQHASFCVLV---AD 586
                                                                       
Sbjct: 632                                                              691

Query: 587 PKSEIGRER-MTAMTDTDDGFEVSRRDLELRGPGDFFGTKQSG 628
                                                      
Sbjct: 692                                             734


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 49,140,646
Number of extensions: 2054154
Number of successful extensions: 3303
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3301
Number of HSP's successfully gapped: 2
Length of query: 685
Length of database: 38,378,431
Length adjustment: 113
Effective length of query: 572
Effective length of database: 25,345,689
Effective search space: 14497734108
Effective search space used: 14497734108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 119 (50.4 bits)