BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0490.0027.p
         (272 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC1325 [S] COG1284 Uncharacterized conserved protein                 103   2e-22
lin1422 [S] COG1284 Uncharacterized conserved protein                  86   9e-17
BS_yqfU [S] COG1284 Uncharacterized conserved protein                  74   2e-13

>CAC1325 [S] COG1284 Uncharacterized conserved protein
          Length = 285

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 3/237 (1%)

Query: 22  FLMPHQLVPGGIAGLSALFAHTTEMRXXXXXXXXXXXXXXISRRQIHLRFALYVMLGLVC 81
           FL+P+ ++ GGI G+S +  H   +               +  +QI   FA   +  ++C
Sbjct: 32  FLIPNNIIDGGITGISIIANHFINLPLGIFIFLLNLPFLIVGYKQIGKTFAFSTLFSVIC 91

Query: 82  LTAGSLALHRFPSLTGEPLTXXXXXXXXXXXXXXXXXXXXXXXXXAGDPGYALLSQGPAK 141
           L+ G   LH  P +T + L                            +    +L +    
Sbjct: 92  LSIGVSVLHPIPGITHDILLATIFGGIILGAGVGLIIRNGGSLDGT-EIVAIILDKRIGF 150

Query: 142 SAEYIIMVFNCTILLCGGALFGWDQAMYSILAYLLAFEAVRICIRDLSRTRAVWITSSRP 201
           S   I+M FN  IL   G +FGWD+AMYS++AY +AF+ + I +  L+ +++V + S + 
Sbjct: 151 SIGEIVMFFNLFILGASGIVFGWDRAMYSLIAYFIAFKTIDITVEGLNESKSVIVVSDKH 210

Query: 202 EEIRLALHRKLAREAKLIRASGA-KGQ-PGTLFCIASKLEEEELATIVRTCDQDSQI 256
           +EI  AL  +L R   L+   GA KG     ++ + S+LE  +L +IV   D+++ I
Sbjct: 211 KEISSALTSRLGRGVTLLHGEGAYKGDTTNVIYVVVSRLEIAKLRSIVHDFDENALI 267


>lin1422 [S] COG1284 Uncharacterized conserved protein
          Length = 308

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 7/237 (2%)

Query: 22  FLMPHQLVPGGIAGLSALFAHTTEMRXXXXXXXXXXXXXXISRRQIHLRFALYVMLGLVC 81
           FL+ ++++ GG+ G+S + +  T +               I  R+I   FAL+ + G+  
Sbjct: 51  FLVNNRILDGGVVGISIIISQLTPLPLGVLTFVLNIPFFIIGYRKIGKVFALFTLYGIAV 110

Query: 82  LTAGSLALHRFPSLTGEPLTXXXXXXXXXXXXXXXXXXXXXXXXXAGDPGYALLSQGPAK 141
           ++  +L LH    +T + L                                 +  + P  
Sbjct: 111 MSIVTLVLHDMDPVTDDLLLATVFGGMTLGLGVGLVIRNGGALDGTEIISIIINGRTPFS 170

Query: 142 SAEYIIMVFNCTILLCGGALFGWDQAMYSILAYLLAFEAVRICIRDLSRTRAVWITSSRP 201
           + + IIM  N  I +  G +F WD+AMYS++ Y LA++ + I I+ +  +++ +I S   
Sbjct: 171 TGQ-IIMFINIVIFIVAGLVFNWDRAMYSLITYFLAYKVIDIVIQGVDESKSAFIISRYY 229

Query: 202 EEIRLALHRKLAREAKLIRASGAKGQPG----TLFCIASKLEEEELATIVRTCDQDS 254
           EEI   +  +L +    + A+G  G  G     +F I S+ EE ++  I+   D D+
Sbjct: 230 EEIGAEIMEQLGKGVTYLDATG--GYSGDVRKVVFVIVSRFEEVKVKAILDEIDPDA 284


>BS_yqfU [S] COG1284 Uncharacterized conserved protein
          Length = 293

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 7/241 (2%)

Query: 22  FLMPHQLVPGGIAGLS----ALFAHTTEMRXXXXXXXXXXXXXXISRRQIHLRFALYVML 77
           FL+P+  + GGI G+S     LF     +                  + I   F +   +
Sbjct: 36  FLIPNDFIDGGIIGVSLILDHLFMSNPFLNFAFSVVILNIPFMIFGYKYIGKTFLVSTFI 95

Query: 78  GLVCLTAGSLALHRFPSLTGEPLTXXXXXXXXXXXXXXXXXXXXXXXXXAGDPGYALLSQ 137
           G+V L     +LH   ++T +P+                              G  L  +
Sbjct: 96  GIVGLAVIESSLHHVEAITTQPILATVFGGLLLGFGVGLVIRNGGSMDGTEILGILLTKK 155

Query: 138 GPAKSAEYIIMVFNCTILLCGGALFGWDQAMYSILAYLLAFEAVRICIRDLSRTRAVWIT 197
            P    E++ M  N  I +    +FG +QAMYS + Y +A + +   I+ L  T+AV I 
Sbjct: 156 LPFSVGEFV-MFINVFIFIWAVFVFGPEQAMYSFMTYYIAMKTIDAVIQGLDETKAVIIV 214

Query: 198 SSRPEEIRLALHRKLAREAKLIRASGA--KGQPGTLFCIASKLEEEELATIVRTCDQDSQ 255
           S + +EI  A+  +L R    ++  G     +   ++ + ++LE  +L +IV   DQ++ 
Sbjct: 215 SEQYDEISDAILHRLGRGTTKLKGKGGYTDEEKDVIYAVVTRLEVTKLKSIVFEVDQNAF 274

Query: 256 I 256
           I
Sbjct: 275 I 275


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.327    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,246,560
Number of extensions: 389993
Number of successful extensions: 855
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 860
Number of HSP's successfully gapped: 3
Length of query: 272
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 167
Effective length of database: 26,268,361
Effective search space: 4386816287
Effective search space used: 4386816287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 115 (48.9 bits)