BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0490.0025.p
         (164 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yhaT [P] COG0490 Putative regulatory, ligand-binding protein ...   167   5e-42
BS_yrvC [P] COG0490 Putative regulatory, ligand-binding protein ...   137   5e-33

>BS_yhaT [P] COG0490 Putative regulatory, ligand-binding protein related to
           C-terminal domains of K+ channels
          Length = 54

 Score =  167 bits (424), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 0/164 (0%), Positives = 0/164 (0%)

Query: 1   MNYRESDLPGIGKKFVMQTRSGDKLVVIVHDDGRRELYHFEYDDPDQSISMITLDDDEAR 60
                                                                       
Sbjct: 1                                                                60

Query: 61  YISAIVGGITYKPKALESIEVALDDLIIEWYRLEQDFKCIGHSIGELDXXXXXXXXXXXX 120
                                                                       
Sbjct: 61                                                               120

Query: 121 XEKNHQKHINPGPEVLLPAECTVVAAGERHQHKQFKHILRNGCG 164
                                                       
Sbjct: 121                                              164


>BS_yrvC [P] COG0490 Putative regulatory, ligand-binding protein related to
           C-terminal domains of K+ channels
          Length = 165

 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 96/148 (64%)

Query: 1   MNYRESDLPGIGKKFVMQTRSGDKLVVIVHDDGRRELYHFEYDDPDQSISMITLDDDEAR 60
           M  RES+LPGIG+K  M TR+ DK+ +I+H DGRRELY+F+ +D ++ ++ +  DD EAR
Sbjct: 1   MRVRESELPGIGQKVEMITRNRDKISIIIHHDGRRELYYFDENDHEECVASVQFDDAEAR 60

Query: 61  YISAIVGGITYKPKALESIEVALDDLIIEWYRLEQDFKCIGHSIGELDXXXXXXXXXXXX 120
            +SAI+GG+ YKPKALE +E ALDDLIIEW + E     I  +IG+L+            
Sbjct: 61  QMSAILGGMAYKPKALEQVESALDDLIIEWCKAEAGAPAIHQTIGDLNVGQEYHVTVIAI 120

Query: 121 XEKNHQKHINPGPEVLLPAECTVVAAGE 148
            +KN  K +NP  E ++    T+V +GE
Sbjct: 121 VKKNQDKQLNPSSETVIDEGDTLVISGE 148


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,908,493
Number of extensions: 447405
Number of successful extensions: 656
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 2
Length of query: 164
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 66
Effective length of database: 27,075,699
Effective search space: 1786996134
Effective search space used: 1786996134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)