BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0490.0023.p
         (121 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SP1551 [P] COG0474 Cation transport ATPase                            123   8e-29
MA4082 [P] COG0474 Cation transport ATPase                            114   3e-26
CAC2137 [P] COG0474 Cation transport ATPase                           113   6e-26
alr3723 [P] COG0474 Cation transport ATPase                           111   2e-25
slr0822 [P] COG0474 Cation transport ATPase                           108   2e-24

>SP1551 [P] COG0474 Cation transport ATPase
          Length = 914

 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 82/102 (80%), Gaps = 3/102 (2%)

Query: 19  TSISLAVAAIPEGLPAIVTIILALGVQRMAKRKAIIRKLPAVETLGSTEIICSDKTGTLA 78
           TS++LAVAAIPEGLPAIVTI+L+LG Q +AKR +I+RKLPAVETLGSTEII SDKTGTL 
Sbjct: 299 TSVALAVAAIPEGLPAIVTIVLSLGTQVLAKRHSIVRKLPAVETLGSTEIIASDKTGTLT 358

Query: 79  LNKMTVEKLYVDGQKVDAGSSID-GLQGRERLVQAMTLCNDS 119
           +NKMTVEK++ D    D+   I+ GL+    L++++ L ND+
Sbjct: 359 MNKMTVEKVFYDAVLHDSADDIELGLE--MPLLRSVVLANDT 398


>MA4082 [P] COG0474 Cation transport ATPase
          Length = 909

 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/120 (53%), Positives = 78/120 (65%), Gaps = 22/120 (18%)

Query: 21  ISLAVAAIPEGLPAIVTIILALGVQRMAKRKAIIRKLPAVETLGSTEIICSDKTGTLALN 80
           ++LAVAAIPE LPA+VT+ L LGV+RM KR A++RKLP+VETLG+T++ICSDKTGTL  N
Sbjct: 272 VALAVAAIPEALPAVVTVGLGLGVRRMVKRHALVRKLPSVETLGATDVICSDKTGTLTQN 331

Query: 81  KMTVEKLYVDGQ---------------------KVDAGSSIDGLQGRERLVQAMTLCNDS 119
           KMTVEK+YV+ Q                     K D   S D L  R  L+ A  LCNDS
Sbjct: 332 KMTVEKIYVNKQNLKVTGNGYNPEGKFLKEDSDKEDPEVSEDDLHLRTLLLGA-ALCNDS 390


>CAC2137 [P] COG0474 Cation transport ATPase
          Length = 845

 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 70/98 (71%), Gaps = 2/98 (2%)

Query: 21  ISLAVAAIPEGLPAIVTIILALGVQRMAKRKAIIRKLPAVETLGSTEIICSDKTGTLALN 80
           +SLAVAAIPEGLPAIVT+ LA+GV RM KR A++RKLPAVETLG T IICSDKTGTL  N
Sbjct: 251 VSLAVAAIPEGLPAIVTVALAIGVSRMLKRNALVRKLPAVETLGCTSIICSDKTGTLTQN 310

Query: 81  KMTVEKLYVDGQKVDAGSSIDGLQGRERLVQAMTLCND 118
           KMTV+ +Y + Q  +    +   +  E L +    CND
Sbjct: 311 KMTVKAMYFNNQIYE--KELYSEERFELLKRTFIYCND 346


>alr3723 [P] COG0474 Cation transport ATPase
          Length = 359

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 9/90 (10%), Positives = 20/90 (22%)

Query: 3   FAVXXXXXXXXXXXXXTSISLAVAAIPEGLPAIVTIILALGVQRMAKRKAIIRKLPAVET 62
             V              S +  +    E        +  + V    + +        +  
Sbjct: 267 LGVVAMGYGDGYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWG 326

Query: 63  LGSTEIICSDKTGTLALNKMTVEKLYVDGQ 92
            G      ++ T   A   +T     V  +
Sbjct: 327 EGLPVERIAEMTKVSAYELITRLTSRVAMK 356


>slr0822 [P] COG0474 Cation transport ATPase
          Length = 953

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 68/93 (73%), Gaps = 2/93 (2%)

Query: 19  TSISLAVAAIPEGLPAIVTIILALGVQRMAKRKAIIRKLPAVETLGSTEIICSDKTGTLA 78
           TS+S+AVA +PEGLPA++T+ LALG QRM KR A+IRKLPAVETLGS  +ICSDKTGTL 
Sbjct: 303 TSLSMAVAVVPEGLPAVITVTLALGTQRMIKRHALIRKLPAVETLGSVNVICSDKTGTLT 362

Query: 79  LNKMTVEKLYVDGQKVDAGSSIDGLQGRERLVQ 111
            NKM V ++   G ++  G   +G Q +  ++ 
Sbjct: 363 QNKMVVREVLTHGDRLSIGG--EGYQPQGNIIH 393


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.133    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,781,067
Number of extensions: 223064
Number of successful extensions: 915
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 913
Number of HSP's successfully gapped: 43
Length of query: 121
Length of database: 38,378,431
Length adjustment: 87
Effective length of query: 34
Effective length of database: 28,344,373
Effective search space: 963708682
Effective search space used: 963708682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)