BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0017.p (264 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_opuCA [E] COG1125 ABC-type proline/glycine betaine transport ... 123 4e-28 BS_opuBA [E] COG1125 ABC-type proline/glycine betaine transport ... 117 2e-26 alr0610_1 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tra... 115 5e-26 slr0043_1 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tra... 114 2e-25 sll1452_1 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tra... 114 2e-25 >BS_opuCA [E] COG1125 ABC-type proline/glycine betaine transport systems, ATPase components Length = 380 Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 13/228 (5%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 MLKL+ VSK++ G K A+ IDL++ G+F+ IG +G GK+T M +I+ +++P Sbjct: 1 MLKLEQVSKVYKGG----KKAVNSIDLDIAKGEFICFIGPSGCGKTTTMKMINRLIEPSS 56 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 G + I+G +I Q + R IG V Q G PHMTI++N+++ K L Sbjct: 57 GRIFIDGENIMEQDPVELRRKIGYVIQ--QIGLFPHMTIQQNISLVPK------LLKWPE 108 Query: 121 AARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 R+ RE L + +G E R LSGG++Q + +L A +P ++L+DE ALD Sbjct: 109 EKRKERARELLKLVDMGPEYLDRYP-HELSGGQQQRIGVLRALAAEPPLILMDEPFGALD 167 Query: 181 PARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGSII 228 P + + + + R L T + VTH+M++AI+L +R++++ G I+ Sbjct: 168 PITRDSLQEEFKKLQRTLNKTIVFVTHDMDEAIKLADRIVILKAGEIV 215 >BS_opuBA [E] COG1125 ABC-type proline/glycine betaine transport systems, ATPase components Length = 381 Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 13/228 (5%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 ML L++VSK + G K A+ ++L++ G+F+ IG +G GK+T M +I+ +++P Sbjct: 1 MLTLENVSKTYKGG----KKAVNNVNLKIAKGEFICFIGPSGCGKTTTMKMINRLIEPSA 56 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 G++ I+G +I Q + R IG V Q G PHMTI++N+++ K L Sbjct: 57 GKIFIDGENIMDQDPVELRRKIGYVIQ--QIGLFPHMTIQQNISLVPK------LLKWPE 108 Query: 121 AARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 R+ RE L + +G E R LSGG++Q + +L A +P ++L+DE ALD Sbjct: 109 QQRKERARELLKLVDMGPEYVDRYP-HELSGGQQQRIGVLRALAAEPPLILMDEPFGALD 167 Query: 181 PARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGSII 228 P + + + + + L T + VTH+M++AI+L +R++++ G I+ Sbjct: 168 PITRDSLQEEFKKLQKTLHKTIVFVTHDMDEAIKLADRIVILKAGEIV 215 >alr0610_1 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 259 Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 133/229 (58%), Gaps = 21/229 (9%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 +++DHV ++F+ IAL I+L+++ G+FV++IG +G GKSTL+N+I+G+ + + Sbjct: 4 FVEIDHVDRIFDLPNGGRYIALKNIELKIKQGEFVSLIGHSGCGKSTLLNIIAGLDRASI 63 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMA---YKRGQSRGLSF 117 G V +EG I S + VFQ+ P +T+ EN+A+A +G+S+G Sbjct: 64 GGVTLEGREIREPSPDRMV-----VFQN--YSLLPWLTVRENVALAVDEVYQGKSKG--- 113 Query: 118 GVSAARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTA 177 RR + E + +G+ L R LSGG +Q +++ A T+P++LLLDE Sbjct: 114 ----ERRAIIEEHIDMVGLRLAANKRPSE--LSGGMKQRVAIARALATRPKLLLLDEPFG 167 Query: 178 ALDP-ARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKG 225 ALD R L +L + I E ++T +MVTH++++A+ L +R++M+ G Sbjct: 168 ALDALTRGSLQEQLMK-ICNEHQITCVMVTHDVDEALLLSDRVVMLTNG 215 >slr0043_1 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 276 Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 143/252 (56%), Gaps = 24/252 (9%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 + +D++ K+F+ E IAL GI+LE++ G+FV++IG +G GKSTL+N+I+G+ P Sbjct: 4 FVAVDNIDKVFSLTDGGEYIALKGINLEIKKGEFVSLIGHSGCGKSTLLNMIAGLDLPSE 63 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 G V +EG I + +FQ+ P +T+++N+A+A + G S Sbjct: 64 GIVTLEGQRIKQPGPDKMV-----IFQN--YSLLPWLTVKQNIALAVDE-----VMKGAS 111 Query: 121 AA-RRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAAL 179 AA R+ + E ++ +G+G + + + G LSGG +Q +++ A +P++LLLDE AL Sbjct: 112 AAERKAIVEEHINLVGLG--HAVDKRPGELSGGMKQRVAIARALAIRPKLLLLDEPFGAL 169 Query: 180 DP-ARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGS-------IILDI 231 D R L +L I + ++T +MVTH++++A+ L +R++M+ G + +DI Sbjct: 170 DALTRGNLQEQLMR-ICEQYQVTAVMVTHDVDEAVLLSDRIVMLTNGPGSNIGGILEVDI 228 Query: 232 DEDRKQDLTVER 243 RK+ VE Sbjct: 229 PRPRKRMEVVEH 240 >sll1452_1 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 257 Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 132/227 (58%), Gaps = 15/227 (6%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 +++DHV ++F IAL I+L++ G+F+++IG +G GKSTL+N+ISG+ KP Sbjct: 4 FIEIDHVDRIFPLPDGGRYIALKNIELKISQGEFISLIGHSGCGKSTLLNMISGLDKPTF 63 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 G V +EG I +E R + VFQ+ P +T+ +N+A+A R R L Sbjct: 64 GGVIMEGKEI---TEPGPERMV--VFQN--YSLLPWLTVRQNIALAVNR-VLRDLP---K 112 Query: 121 AARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 + + + ++ +GL+ + G LSGG +Q +++ A T+P++LLLDE ALD Sbjct: 113 PEQEKIIDDNIAL--VGLQRAAHKRPGELSGGMKQRVAIARALSTRPKVLLLDEPFGALD 170 Query: 181 P-ARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGS 226 R L RL E IV+E +T +MVTH++++A+ L +R++M+ G Sbjct: 171 ALTRGNLQERLME-IVQESGVTCIMVTHDVDEALLLSDRVVMLTTGP 216 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,968,709 Number of extensions: 738490 Number of successful extensions: 17407 Number of sequences better than 1.0e-05: 2058 Number of HSP's gapped: 14731 Number of HSP's successfully gapped: 2250 Length of query: 264 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 160 Effective length of database: 26,383,695 Effective search space: 4221391200 Effective search space used: 4221391200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)