BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0014.p (450 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yesO [G] COG1653 ABC-type sugar transport system, periplasmic... 273 4e-73 BH1117 [G] COG1653 ABC-type sugar transport system, periplasmic ... 136 7e-32 YPO1719 [G] COG1653 ABC-type sugar transport system, periplasmic... 86 1e-16 BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasm... 73 1e-12 lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic... 72 1e-12 >BS_yesO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 412 Score = 273 bits (698), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 143/301 (47%), Positives = 195/301 (64%), Gaps = 7/301 (2%) Query: 94 VTLRIAWWGGDTRHSYTQQVIDMYEAQNPNVKIEPEYASFDDYWKKLAPQAAANRLPDIV 153 VTLRIAWWGG RH YT +VI++YE +NP+V IE E+A++DDYWKKLAP +AA +LPD++ Sbjct: 18 VTLRIAWWGGQPRHDYTTKVIELYEKKNPHVHIEAEFANWDDYWKKLAPMSAAGQLPDVI 77 Query: 154 QMDVSYINQYGSNGQLEDMTPYL-NKTVQVGDVNENVLGTGKIDGKQYGIPLGVNVLGFH 212 QMD +Y+ QYG QLED+TPY + T+ V ++EN+L GKID K YG LGVNVL Sbjct: 78 QMDTAYLAQYGKKNQLEDLTPYTKDGTIDVSSIDENMLSGGKIDNKLYGFTLGVNVLSVI 137 Query: 213 YDPALLKKAGVDSIPDNWTWDQYKEIAMK-AKAAGLYMDSSM-AADIFFNYYLRTKGLSL 270 + LLKKAGV +NWTW+ Y+++A + AG+Y + M DIFF YYLRTKG Sbjct: 138 ANEDLLKKAGVSINQENWTWEDYEKLAYDLQEKAGVYGSNGMHPPDIFFPYYLRTKGERF 197 Query: 271 YNTDXXXXSALGYDDDALFRDFFGMLSDLIAKGAVPSQDKLSQNKGVIEEADVVKGTGIG 330 Y D + L Y DD LF D+F L+ P+ D+ +Q KG +E+ +VKG Sbjct: 198 YKED---GTGLAYQDDQLFVDYFERQLRLVKAKTSPTPDESAQIKG-MEDDFIVKGKSAI 253 Query: 331 IWQWSNQYVALQIAVNRPMELAQMPGPDMEKGLYMQPSMYWSVTANSKNKEEAAKFIDFW 390 W +SNQY+ + P+ L P EK L ++PSM +S+ +S++K+EAAKFI+F+ Sbjct: 254 TWNYSNQYLGFARLTDSPLSLYLPPEQMQEKALTLKPSMLFSIPKSSEHKKEAAKFINFF 313 Query: 391 T 391 Sbjct: 314 V 314 >BH1117 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 434 Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 106/358 (29%), Positives = 177/358 (49%), Gaps = 37/358 (10%) Query: 45 RFALLAVPMLLSMLAGCG-GNNNTPDXXXXXXXXXXXQXXXXXXXXXXXXVTLRIAWWGG 103 R LL V LL +LAGC G +N D V LR+AWWGG Sbjct: 8 RSCLLGVAFLL-VLAGCSSGTSNEVDGEQEAGNED---------------VVLRVAWWGG 51 Query: 104 DTRHSYTQQVIDMYEAQNPNVKIEPEYASFDDYWKKLAPQAAANRLPDIVQMDVSYINQY 163 RH T + I+++E + P+++++PE+ S+D+YW++L QAA N LPD++QMD S +N+Y Sbjct: 52 QERHDMTIEAIELFEEKYPHIQVDPEFTSWDNYWERLTTQAAGNNLPDVIQMDNSKLNEY 111 Query: 164 GSNGQLEDMTPYL-NKTVQVGDVNENVLGTGKIDGKQYGIPLGVNVLGFHYDPALLKKAG 222 S G + D+ + + T+ + DV++ DG + + G N L Y+ +L++ G Sbjct: 112 SSRGLVIDLQSLIADGTINLDDVDDVYQDMNVQDGSVWAVSAGSNALAAIYNEEMLEEQG 171 Query: 223 VDSIPDNWTWDQYKEI--AMKAKAAGLY--MDSSMAADIFFNYYLRTKGLSLYNTDXXXX 278 + P +T++ + E +K G + D A F Y R G S YN D Sbjct: 172 IQLEP-GYTYEDFYEAMQTLKENIDGDFYGYDFGNAEYEMFFVYARQNGESFYNED---G 227 Query: 279 SALGYDDDALFRDFFGMLSDLIAKGAVPSQ----DKLSQNKGVIEEADVVKGTGIGIWQW 334 + LG+++ L DF + ++ G P + + + ++ D + G + Sbjct: 228 TGLGFENQTLI-DFLTFVKQMVDDGVAPPHALTLEYIQGGESLL--GDQMAGAAMAA--- 281 Query: 335 SNQYVALQIAVNRPMELAQMPGPD-MEKGLYMQPSMYWSVTANSKNKEEAAKFIDFWT 391 SN + LQ + + L +P D G +++PSM +S++++S+ +E AA FIDF T Sbjct: 282 SNGIIGLQQSTEHQLGLMLLPSLDGGVHGNWIRPSMSYSISSHSEEQEAAALFIDFLT 339 >YPO1719 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 430 Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/306 (22%), Positives = 135/306 (44%), Gaps = 15/306 (4%) Query: 94 VTLRIAWWGGDTRHSYTQQVIDMYEAQNPNVKIEPEYASFDDYWKKLAPQAAANRLPDIV 153 V LR++WWGG+ RH T + ++ + Q+PN+ ++ EY +D + +L Q A PD++ Sbjct: 28 VNLRMSWWGGNGRHQVTLKALEEFHKQHPNINVKAEYTGWDGHLSRLTTQIAGGTEPDVM 87 Query: 154 QMDVSYINQYGSNGQLEDMTPYLNKTVQVGDVNENVLGTGKIDGKQYGIPLGVNVLGFHY 213 Q + +++ + +G + + + + + L ++GK GIP+ V F++ Sbjct: 88 QTNWNWLPIFSKDGTGFFDLNNVKEQLDLAQFDPIELQQTTVNGKLNGIPISVTARIFYF 147 Query: 214 DPALLKKAGVDSIPDNWTWDQYKEI--AMKAKAAGLYMDSSMAADIFFNYYLRTKGLSLY 271 + A KAG++ P TWD+ K K Y + +R+ Y Sbjct: 148 NDATWAKAGLE-YPK--TWDELLNAGQVFKEKLGDQYYPVVLEHQDTLA-LIRSYMTQKY 203 Query: 272 N--TDXXXXSALGYDDDALFRDFFGMLSDLIAKGAVPSQDKLSQ--NKGVIEEADVVKGT 327 N T Y + + +FF M ++ +PS + + E + G Sbjct: 204 NIPTVDEANKKFAYTPEQ-WVEFFTMYKKMVDSHVMPSSKYYASFGKSNMYEMKPWINGE 262 Query: 328 GIGIWQWSNQYVALQIAVNRPMELAQMPGPDM----EKGLYMQPSMYWSVTANSKNKEEA 383 G + W++ + +P +L P P + + GL+ +P+ S+ ++K+ +E+ Sbjct: 263 WAGTYMWNSTITKYSDNLTKPAKLDLGPYPMLPDAKDAGLFFKPAQMLSIGKSTKHPKES 322 Query: 384 AKFIDF 389 A I+F Sbjct: 323 AMLINF 328 >BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 398 Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 132/290 (45%), Gaps = 21/290 (7%) Query: 109 YTQQVIDMYEAQNPNVKIEPEYASFDDYWKKLAPQAAANRLPDIVQMDVSYINQYGSNGQ 168 Y ++V +EA+NP + + E +D +KL +A D+ + ++ + G Sbjct: 29 YFEEVKKAFEAENPGITLNFEVVPWDVLLQKLTTDISAGTNADLSIIGTRWLIDFVQQGI 88 Query: 169 LEDMTPYLNKTVQVGDVNENVLGTGKIDGKQYGIPLGVNVLGFHYDPALLKKAGVDSIPD 228 E + Y+N + G E L +DGK YG+P+ +V +Y+ L +KAG+ + P Sbjct: 89 AEPLDGYMNDEFK-GRFIETFLSPSVLDGKTYGLPIAASVRAMYYNKDLFEKAGIKNPPA 147 Query: 229 NWTWDQYKEIAMKAKAAG------LYMDSSMAADIFFNYYLRTKGLSLYNTD-XXXXSAL 281 N WD+ K A K KA G + D+++ Y + + G + N D S Sbjct: 148 N--WDELKADAAKIKALGGENYGFGLQGKEIETDVYYYYAMWSYGTEILNKDGTSGLSTP 205 Query: 282 GYDDDALFRDFFGMLSDLIAKGAVPSQDKLSQNKGVIEEADVVKGTGIGIWQWSNQYVAL 341 G + A + + M+ D + + V S + + + ++ V G I SNQ Sbjct: 206 GALEAA--KLYKSMIDDGLTQPGVTSYAR-EDVQNLFKQGKV--GMMITAPFLSNQIK-- 258 Query: 342 QIAVNRPMELAQMP-GPDMEKGLY-MQPSMYWSVTANSKNKEEAAKFIDF 389 + A N +A +P GP +G Y + S+ + NSKNKEEA K +DF Sbjct: 259 EEAPNLKYGVAAIPAGPTGARGTYGVTDSVI--MFQNSKNKEEAWKVLDF 306 >lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 112 QVIDMYEAQNPNVKIEPEYASFDDYWKKLAPQAAANRLPDIVQMDVSYINQYGSNGQLED 171 +++ +E QNP++K+ + +F+DY+ KL Q A PD +++ QY G L D Sbjct: 49 KMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPDAFELNYETFMQYAEKGVLAD 108 Query: 172 MTPYL--NKTVQVGDVNENVLGTGKIDGKQYGIPLGVNVLGFHYDPALLKKAGVDSIPDN 229 +T Y+ +K +N+ K DGKQYG+ + + Y+ L KAGV+ + Sbjct: 109 LTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKAGVEYPTAD 168 Query: 230 WTWDQYKEIAMK 241 WTW + A K Sbjct: 169 WTWKDEEAAAKK 180 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 32,412,220 Number of extensions: 1401950 Number of successful extensions: 2214 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 2200 Number of HSP's successfully gapped: 30 Length of query: 450 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 340 Effective length of database: 25,691,691 Effective search space: 8735174940 Effective search space used: 8735174940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)