BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0012.p (317 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yesP [G] COG1175 ABC-type sugar transport systems, permease c... 402 e-112 BH1118 [G] COG1175 ABC-type sugar transport systems, permease co... 328 1e-89 YPO1722 [G] COG1175 ABC-type sugar transport systems, permease c... 275 7e-74 BH1865 [G] COG1175 ABC-type sugar transport systems, permease co... 189 6e-48 lin0760 [G] COG1175 ABC-type sugar transport systems, permease c... 180 2e-45 >BS_yesP [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust. Identities = 202/298 (67%), Positives = 241/298 (80%), Gaps = 2/298 (0%) Query: 17 KKPLGQRLRKNLTGYAFISPFIIGFLCFTLVPMAISLYLSFTKYNLFAPPRWIGFDNYIK 76 KK R + NL GYAFISPFIIGFLCFT++PM SL+LSFT Y+LF P+WIG DN+ + Sbjct: 10 KKSRSIR-KDNLAGYAFISPFIIGFLCFTVIPMGASLFLSFTSYDLFTAPKWIGLDNFKE 68 Query: 77 MFTGDPKYVHSLKVTLLYVFIGVPLRLGFALFVAMILNTRSRMVGAYRTVYYLPSIIGGS 136 MFTGD KY SLKVT YV GVPLRLGFALF+A+ILN ++ YRT++YLPSIIGGS Sbjct: 69 MFTGDEKYWQSLKVTFTYVLAGVPLRLGFALFIAVILNNAAKGTAIYRTLFYLPSIIGGS 128 Query: 137 VAVSIMWRNIFSDTGIINGMLGFFGLGP-VSWFGNPNAALFMLITLSVWQFGSSMLIFLA 195 VAV+IMWRNIF + G+IN +L F G+ + W+ NP +AL+ LI LSVWQFGSSMLIFLA Sbjct: 129 VAVAIMWRNIFGNDGVINALLFFVGIDQKILWYQNPTSALWTLILLSVWQFGSSMLIFLA 188 Query: 196 GLKNISGEMYEAASVDGASFFRKFFKITLPLLSSVILFNMVMQTISAFMTFVPAYIISKG 255 GLKNI EAASVDGA+ ++FFKITLP+L+ +I FN+VMQTISAFMTF PAYIISKG Sbjct: 189 GLKNIPSSYLEAASVDGANRVQRFFKITLPILTPIIFFNLVMQTISAFMTFTPAYIISKG 248 Query: 256 EGGPMDGTMLYSLYLFRQAFMFNNMGYASAMAWVMLLLVGIMTGILFKTSKSWVFYES 313 EGGP+DGT+LYSLYLF++AF + MGYASAMAWVML++VG++T ILFKTS WV YES Sbjct: 249 EGGPLDGTLLYSLYLFQRAFNYFQMGYASAMAWVMLVIVGLITLILFKTSSYWVHYES 306 >BH1118 [G] COG1175 ABC-type sugar transport systems, permease components Length = 318 Score = 328 bits (840), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 161/319 (50%), Positives = 223/319 (69%), Gaps = 6/319 (1%) Query: 3 LSNPLPVNPRALRAKKPLGQRLRK----NLTGYAFISPFIIGFLCFTLVPMAISLYLSFT 58 + + VN A+ ++ RK + GYA ISP+++GF + PM SLY SFT Sbjct: 1 MRDAAKVNREAIELYDSKTRQERKKWKESFVGYAMISPWLLGFFGLVIGPMIASLYFSFT 60 Query: 59 KYNLFAPPRWIGFDNYIKMFTGDPKYVHSLKVTLLYVFIGVPLRLGFALFVAMILNTRSR 118 Y++ + W+G NYI +FT DP++V SLKVTL++VF+ PL+L FALF+AM+ NT + Sbjct: 61 DYDMLSSANWVGLQNYIHIFTSDPRFVQSLKVTLIFVFVPTPLKLAFALFLAMLFNTGRK 120 Query: 119 MVGAYRTVYYLPSIIGGSVAVSIMWRNIFSDTGIINGMLGFFGLGPVSWFGNPNAALFML 178 G + T+YY+PSIIGGSVAV+++W+ +F G +N L FG V+W G+ + AL +L Sbjct: 121 GSGLFSTIYYIPSIIGGSVAVAVVWKQLFGSRGAVNSFLELFGFSGVNWIGSTDYALSIL 180 Query: 179 ITLSVWQFGSSMLIFLAGLKNISGEMYEAASVDGASFFRKFFKITLPLLSSVILFNMVMQ 238 I L VWQFGS M+IFLAGL+ I E+YEAASVDGA+ FRKFF ITLP+L+ VI FN++MQ Sbjct: 181 ILLVVWQFGSPMIIFLAGLRQIPQELYEAASVDGANSFRKFFSITLPMLTPVIFFNLIMQ 240 Query: 239 TISAFMTFVPAYIISKGEGGPMDGTMLYSLYLFRQAFMFNNMGYASAMAWVMLLLVGIMT 298 TI FMTF AY+I+ GGP+D T+ Y++YL+ AF + MGYASAMAW++L+++G +T Sbjct: 241 TIGGFMTFTQAYLITG--GGPLDSTLFYAVYLYEVAFEYLRMGYASAMAWILLVIIGGIT 298 Query: 299 GILFKTSKSWVFYESGGGK 317 + FK+S WV YES GG+ Sbjct: 299 FVFFKSSSYWVHYESEGGR 317 >YPO1722 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 275 bits (703), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 136/294 (46%), Positives = 198/294 (67%), Gaps = 3/294 (1%) Query: 25 RKNLTGYAFISPFIIGFLCFTLVPMAISLYLSFTKYNLFAPPRWIGFDNYIKMFTGDPKY 84 + G A+ISP+IIG + FT P S +LSFT+Y+L +PP + G +NY M T D + Sbjct: 3 ENRMLGLAYISPYIIGLIIFTAFPFVSSFFLSFTEYDLMSPPVYNGIENYRYMLTEDDLF 62 Query: 85 VHSLKVTLLYVFIGVPLRLGFALFVAMILNTRSRMVGAYRTVYYLPSIIGGSVAVSIMWR 144 S+ VT YVF+ +PL+L FAL +A +LN + R +G +RT +Y+PSI+G SVA++++WR Sbjct: 63 WKSMGVTFAYVFLTIPLKLAFALGIAFVLNFKLRGIGFFRTAFYIPSILGSSVAIAVLWR 122 Query: 145 NIFSDTGIINGMLGFFGLGPVSWFGNPNAALFMLITLSVWQFGSSMLIFLAGLKNISGEM 204 +F+ G++N +G FG ++W G P+ AL + L VWQFGS+M+IFLA L+N+ Sbjct: 123 ALFAIDGLLNSFIGVFGFEAINWLGEPSLALTSVTLLRVWQFGSAMVIFLAALQNVPQSQ 182 Query: 205 YEAASVDGASFFRKFFKITLPLLSSVILFNMVMQTISAFMTFVPAYIISKGEGGPMDGTM 264 YEAA +DGAS ++ F K+T+PL++ VI FN +MQT AF F Y+I+ GGP T Sbjct: 183 YEAAMIDGASKWQMFMKVTVPLITPVIFFNFIMQTTQAFQEFTAPYVITG--GGPTHYTY 240 Query: 265 LYSLYLFRQAFMFNNMGYASAMAWVMLLLVGIMTGILFKTSKSWVFYESG-GGK 317 L+SLY++ AF + +MGY +A+AWV+ L+V + I FK+SK WVFY + GGK Sbjct: 241 LFSLYIYDTAFKYFDMGYGAALAWVLFLVVALFASIAFKSSKYWVFYSADKGGK 294 >BH1865 [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 179/307 (58%), Gaps = 9/307 (2%) Query: 10 NPRALRAKKPLGQRLRKNLT---GYAFISPFIIGFLCFTLVPMAISLYLSFTKYNLFAPP 66 PR + K Q+ R N GY FI+P IIGF F L PM S+Y+SFT ++L+ P Sbjct: 7 TPRETKTTKARKQKRRLNKEYFWGYLFIAPPIIGFAIFALGPMLYSIYVSFTDFDLYNEP 66 Query: 67 RWIGFDNYIKMFTGDPKYVHSLKVTLLYVFIGVPLRLGFALFVAMILNTRSRMVGAYRTV 126 W G DNY ++F D + ++ T Y +G+P+ + +L +A+ LN + + + +RT Sbjct: 67 VWTGADNYYRLFVTDDLFRKTVFNT-FYAALGIPIGMAVSLGIAVALNQKVKGIALFRTA 125 Query: 127 YYLPSIIGGSVAVSIMWRNIF-SDTGIINGMLGFFGLGPVSWFGNPNAALFMLITLSVW- 184 ++LP+ + VA++++WR IF +D G++N ML + G+ W + A+ +I VW Sbjct: 126 FFLPA-VSSVVAITLLWRWIFNADFGLLNIMLNYVGIHGPGWLSDEKWAMPAMIIQGVWG 184 Query: 185 QFGSSMLIFLAGLKNISGEMYEAASVDGASFFRKFFKITLPLLSSVILFNMVMQTISAFM 244 G +M+++LA L+ ++ +YEAA +DG + ++KF IT+P +S F ++ TI A Sbjct: 185 GLGINMILYLAALQGVNPALYEAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQ 244 Query: 245 TFVPAYIISKGEGGPMDGTMLYSLYLFRQAFMFNNMGYASAMAWVMLLLVGIMTGILFKT 304 F I++ EGGP T YLF AF + MGYASAMAWV+ +++ I+T I FK Sbjct: 245 DFQRFMIMT--EGGPNYSTTTVVYYLFLNAFRYMEMGYASAMAWVLGIIILIITIINFKL 302 Query: 305 SKSWVFY 311 +K WV Y Sbjct: 303 AKKWVHY 309 >lin0760 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 103/287 (35%), Positives = 178/287 (62%), Gaps = 6/287 (2%) Query: 23 RLRKNLTGYAFISPFIIGFLCFTLVPMAISLYLSFTKYNLFAPPRWIGFDNYIKMFTGDP 82 ++ + Y FI+ ++ F ++P+ ++L++SFT Y++ P WIGFDNYIKMF DP Sbjct: 10 QIHQQRMAYLFIALPVLLLAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIKMFR-DP 68 Query: 83 KYVHSLKVTLLYVFIGVPLRLGFALFVAMILNTRSRMVGAYRTVYYLPSIIGGSVAVSIM 142 ++ SLK T++Y + VPL L +L A+++N + G +RT +Y+P ++ +VA + + Sbjct: 69 YFLISLKNTIIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVP-VLCSTVATATI 127 Query: 143 WRNIFS-DTGIINGMLGFFGLGPVSWFGNPNAALFMLITLSVW-QFGSSMLIFLAGLKNI 200 W + + G+IN +LG+FG+ +W + N A+F ++ +SVW FG++M+IFLAGL+ I Sbjct: 128 WYWLLNPQYGLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGI 187 Query: 201 SGEMYEAASVDGASFFRKFFKITLPLLSSVILFNMVMQTISAFMTFVPAYIISKGEGGPM 260 +YEA+ ++GAS ++ F +T P LS M I+AF F AY+++K GGP Sbjct: 188 PANLYEASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTK--GGPG 245 Query: 261 DGTMLYSLYLFRQAFMFNNMGYASAMAWVMLLLVGIMTGILFKTSKS 307 + T+ Y++ + F MGYASA+++V+ L++ + + I + +K Sbjct: 246 NSTITLVYYIYNEGFGGLKMGYASAISFVLFLIILVFSIINMRVNKE 292 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.144 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,643,858 Number of extensions: 951864 Number of successful extensions: 3809 Number of sequences better than 1.0e-05: 160 Number of HSP's gapped: 3473 Number of HSP's successfully gapped: 161 Length of query: 317 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 211 Effective length of database: 26,153,027 Effective search space: 5518288697 Effective search space used: 5518288697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 116 (49.3 bits)