BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0011.p (279 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yesQ [G] COG0395 ABC-type sugar transport system, permease co... 352 3e-97 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 273 2e-73 YPO1721 [G] COG0395 ABC-type sugar transport system, permease co... 200 2e-51 MT2099 [G] COG0395 ABC-type sugar transport system, permease com... 155 8e-38 Rv2039c [G] COG0395 ABC-type sugar transport system, permease co... 154 2e-37 >BS_yesQ [G] COG0395 ABC-type sugar transport system, permease component Length = 296 Score = 352 bits (904), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 163/269 (60%), Positives = 217/269 (80%) Query: 10 IYHILIGGLAVIMLYPILWMVLSSFKESRLVFVTAQTLLPHPWEWGNYAKGWEGVAGYSF 69 ++H+ LAV++LYP++W+ +SSFKES +F T+ +L+P P+ NYA+GW+G+AG F Sbjct: 28 LFHVFTATLAVLLLYPVIWLFVSSFKESASIFTTSHSLIPDPFILSNYAEGWKGIAGQPF 87 Query: 70 GVFIKNSFVIVIVATFGAVFSSSLVAFGFARNKFIGHGLWFGIMMMTLMLPADVVLVPQY 129 FIKNS +IV ++T GAV SS+++A+GFAR F G WF MM TLMLP +V+++PQY Sbjct: 88 LTFIKNSAIIVGLSTIGAVMSSAVIAYGFARIPFKGKKFWFACMMGTLMLPHEVLMIPQY 147 Query: 130 IIYTKLNWLDSIRPIVIPQFFGVPFFIFLMLQFIRTIPAELDEAATIDGCGKFRLYYKII 189 I++ KL+WL+S +PIV+PQFFG FFIFLM+QFIRTIP ELDEAA IDGCG+F +++II Sbjct: 148 IMFAKLDWLNSFKPIVVPQFFGHAFFIFLMIQFIRTIPEELDEAARIDGCGRFACFWRII 207 Query: 190 LPLIRPSMATAAIFSFYWRWEDLLGPVLYLNSPSKYTVSMGLKMFLDSESVSNWGPMFAM 249 LPLI P++AT+AIFSFYW+WE+L+ P+LYLN P Y VS+ LK+FLD+ES SNWG MFAM Sbjct: 208 LPLIAPALATSAIFSFYWKWEELIQPLLYLNKPELYPVSLALKLFLDTESASNWGAMFAM 267 Query: 250 SVLSLTPVMLIFFIFQKQIVDGISTSGLK 278 S +SL PV+L+FF+FQK IV GIST+GLK Sbjct: 268 SAVSLLPVILVFFLFQKYIVQGISTTGLK 296 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 273 bits (699), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 128/270 (47%), Positives = 185/270 (68%), Gaps = 1/270 (0%) Query: 10 IYHILIGGLAVIMLYPILWMVLSSFKESRLVFVTAQTLLPHPWEWGNYAKGWEGVAGYSF 69 IY+ + IM+YPILWMV SS K + +F A +L+P + W NY GW G F Sbjct: 12 IYYGFVIAFGFIMVYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGF 71 Query: 70 GVFIKNSFVIVIVATFGAVFSSSLVAFGFARNKFIGHGLWFGIMMMTLMLPADVVLVPQY 129 ++ KNSF+I GA+ SSS+VA+GFAR +F + F ++ T+MLP + L+PQY Sbjct: 72 DIYFKNSFIITTSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQY 131 Query: 130 IIYTKLNWLDSIRPIVIPQFFG-VPFFIFLMLQFIRTIPAELDEAATIDGCGKFRLYYKI 188 I++ L W+++ P+++P F G PFFIFL++QFIR IP ELDEAA IDGC F +++++ Sbjct: 132 ILFHNLGWVNTFYPLIVPAFLGGTPFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRV 191 Query: 189 ILPLIRPSMATAAIFSFYWRWEDLLGPVLYLNSPSKYTVSMGLKMFLDSESVSNWGPMFA 248 ILPL++P++ T AIF+F W W+D L P++YLN TV++GL+ F+D+ES ++WG + A Sbjct: 192 ILPLLKPALVTVAIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDAESGTSWGALLA 251 Query: 249 MSVLSLTPVMLIFFIFQKQIVDGISTSGLK 278 MS LSL P +IF FQ+ +V+GIST+GLK Sbjct: 252 MSTLSLLPQFIIFLFFQRYLVEGISTTGLK 281 >YPO1721 [G] COG0395 ABC-type sugar transport system, permease component Length = 306 Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 95/276 (34%), Positives = 176/276 (63%), Gaps = 2/276 (0%) Query: 5 KIKWPIYHILIGGLAVIMLYPILWMVLSSFKESRLVFVTAQTLLPHPWEWGNYAKGWEGV 64 K+ +I++ + ++MLYP+LWM ++FK + +F T HP G + GW+ Sbjct: 32 KVSAAFRYIVLIIVGLLMLYPLLWMFSAAFKPNNEIFTTLGLWPEHPTSDG-FINGWKTG 90 Query: 65 AGYSFGVFIKNSFVIVIVATFGAVFSSSLVAFGFARNKFIGHGLWFGIMMMTLMLPADVV 124 Y+FG ++ N+F VI + SS++VA+GFAR + WF ++ T++LP+ V+ Sbjct: 91 TEYNFGHYMLNTFKYVIPKVILTIISSTIVAYGFARFEIPWKKFWFTTLITTMLLPSTVL 150 Query: 125 LVPQYIIYTKLNWLDSIRPIVIPQFFGVP-FFIFLMLQFIRTIPAELDEAATIDGCGKFR 183 L+PQYI++ ++ L+S P+ +P F FF+F+++QF+R +P +++EAA IDGC F+ Sbjct: 151 LIPQYIMFREMGMLNSYLPLYLPLAFATQGFFVFMLIQFLRGVPRDMEEAAQIDGCNSFQ 210 Query: 184 LYYKIILPLIRPSMATAAIFSFYWRWEDLLGPVLYLNSPSKYTVSMGLKMFLDSESVSNW 243 + + +++P+++P++ + A+F F W D +GP++Y+ S KY +++ LKM +D + W Sbjct: 211 VLWYVVVPILKPAIISVALFQFMWSMNDFIGPLIYVYSVDKYPIALALKMSIDVTEGAPW 270 Query: 244 GPMFAMSVLSLTPVMLIFFIFQKQIVDGISTSGLKG 279 + AM+ +S+ P +++FF+ Q+ V G+++SG+KG Sbjct: 271 NEILAMASISILPSIIVFFLAQRYFVQGVTSSGIKG 306 >MT2099 [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 147/263 (55%), Gaps = 6/263 (2%) Query: 17 GLAVIMLYPILWMVLSSFKESRLVFVTAQTLLPHPWEWGNYAKGWEGVAGYSFGVFIKNS 76 G+A L+PI+W + S K V T TL P +W NY E A F N+ Sbjct: 24 GIAWCALFPIIWALSGSLKADGEV--TEPTLFPSHPQWSNYR---EVFALMPFWRMFFNT 78 Query: 77 FVIVIVATFGAVFSSSLVAFGFARNKFIGHGLWFGIMMMTLMLPADVVLVPQYIIYTKLN 136 + T G VF SL + FAR +F G F + + TLM+P V ++PQ+I+ + Sbjct: 79 VLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQFILMRIVG 138 Query: 137 WLDSIRPIVIPQFFGVPFFIFLMLQFIRTIPAELDEAATIDGCGKFRLYYKIILPLIRPS 196 W+D+ +++P FG F +LM QF RT+P +L+EAA +DGC +++Y++I+LP RP+ Sbjct: 139 WVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPA 198 Query: 197 MATAAIFSFYWRWEDLLGPVLYLNSPSKYTVSMGLKMFLDSESVSNWGPMFAMSVLSLTP 256 + + ++ W D L P+L + S T+++GL + L E V+ W + A S+L L P Sbjct: 199 VLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGL-VRLRGEYVARWPVLMAASMLMLVP 257 Query: 257 VMLIFFIFQKQIVDGISTSGLKG 279 +++++ + Q+ V GI+ +GL G Sbjct: 258 LVILYAVAQRSFVRGIAVTGLGG 280 >Rv2039c [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 146/263 (55%), Gaps = 6/263 (2%) Query: 17 GLAVIMLYPILWMVLSSFKESRLVFVTAQTLLPHPWEWGNYAKGWEGVAGYSFGVFIKNS 76 G+A L+PI+W + S K V T TL P +W NY E A F N+ Sbjct: 24 GIAWCALFPIIWALSGSLKADGEV--TEPTLFPSHPQWSNYR---EVFALMPFWRMFFNT 78 Query: 77 FVIVIVATFGAVFSSSLVAFGFARNKFIGHGLWFGIMMMTLMLPADVVLVPQYIIYTKLN 136 + T G VF SL + FAR +F G F + + TLM+P V ++PQ I+ + Sbjct: 79 VLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVG 138 Query: 137 WLDSIRPIVIPQFFGVPFFIFLMLQFIRTIPAELDEAATIDGCGKFRLYYKIILPLIRPS 196 W+D+ +++P FG F +LM QF RT+P +L+EAA +DGC +++Y++I+LP RP+ Sbjct: 139 WVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPA 198 Query: 197 MATAAIFSFYWRWEDLLGPVLYLNSPSKYTVSMGLKMFLDSESVSNWGPMFAMSVLSLTP 256 + + ++ W D L P+L + S T+++GL + L E V+ W + A S+L L P Sbjct: 199 VLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGL-VRLRGEYVARWPVLMAASMLMLVP 257 Query: 257 VMLIFFIFQKQIVDGISTSGLKG 279 +++++ + Q+ V GI+ +GL G Sbjct: 258 LVILYAVAQRSFVRGIAVTGLGG 280 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.144 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,723,901 Number of extensions: 757885 Number of successful extensions: 2781 Number of sequences better than 1.0e-05: 187 Number of HSP's gapped: 2531 Number of HSP's successfully gapped: 187 Length of query: 279 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 174 Effective length of database: 26,268,361 Effective search space: 4570694814 Effective search space used: 4570694814 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)