BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0007.p (430 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll7848 [M] COG1368 Phosphoglycerol transferase and related prot... 262 1e-69 SMc00195 [M] COG1368 Phosphoglycerol transferase and related pro... 246 5e-65 SPy0793 [M] COG1368 Phosphoglycerol transferase and related prot... 157 3e-38 STM1703_3 [T] COG2200 FOG: EAL domain 80 8e-15 STM1703_1 [T] COG2202 FOG: PAS/PAC domain 80 8e-15 >mll7848 [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Length = 346 Score = 262 bits (669), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 0/432 (0%), Positives = 0/432 (0%), Gaps = 35/432 (8%) Query: 17 IFWNQKVNYSQNGFVFAFTGNLRQNLLEQPEGYSRESVEAI--AAKYNSLPDTASGQAAV 74 + G + N + + +SR + + K + Sbjct: 227 GVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYV-------- 278 Query: 75 EQPNILFMMDEAFFDPTRLPGITLSDDPLKFIHQAESATPSGYLLSPEFGGNTANVEFEA 134 + + ++ L + + +V E Sbjct: 279 DIARRHGLDPAQMALAFVRRQPFVASTLLGATT----MDQLKTNIESLHLELSEDVLAEI 334 Query: 135 LTGMSMYFLGDGSIPYQQRIVKMSSLPSIVSILKERGYQALALHPFDETFYNRNRVYPVL 194 Sbjct: 335 -- 392 Query: 195 GFDRFTSEKDLQEAERITPDGYISDKAAVQEAIRELKAADTPTFLHMVTMQNHFPFTKGR 254 Sbjct: 393 -- 450 Query: 255 NGPNTITAQGVQAEW-KDELETYVQDTKLTDEALSYLQQELKTIERPTIAVFWGDHLPAL 313 Sbjct: 451 510 Query: 314 SAGIYTDAGW------------DQELRLKHETKLMILANFDIGHTPLGTLSPAYLGPAVF 361 Sbjct: 511 - 569 Query: 362 KLSGQTLPPYYKMLEQVRAQLPGLSKNVLIGASGELSDLTSEQQAL---LDDYRMVEYDL 418 Sbjct: 570 629 Query: 419 LEGEGYAADLMF 430 Sbjct: 630 641 >SMc00195 [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Length = 346 Score = 246 bits (628), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 0/429 (0%), Positives = 0/429 (0%), Gaps = 29/429 (6%) Query: 17 IFWNQKVNYSQNGFVFAFTGNLRQNLLEQPEGYSRESVEAIAAKYNSLPDTASGQAAVEQ 76 F SQ V + + + + Sbjct: 214 SFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNT--LFS---RFTRYSGE 268 Query: 77 PNILFMMDEAFFDPTRLPGITLSDDPLKFIHQAESATPSGYLLSPEFGGNTANVEFEALT 136 + + LL Sbjct: 269 QTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVA----STLLGATTMDQLKTNIESLHL 324 Query: 137 GMSMYFLGDGSIPYQQRIVKMSSLPSIVSILKERGYQALALHPFDETFYNRNRVYPVLGF 196 +S L + +Q Sbjct: 325 ELSEDVLAEIEAVHQVYT-- 382 Query: 197 DRFTSEKDLQEAERITPDGYISDKAAVQEAIRELKAADTPTFLHMVTMQNHFPFTKGRNG 256 Sbjct: 383 -- 440 Query: 257 PNTITAQGVQAEW-KDELETYVQDTKLTDEALSYLQQELKTIERPTIAVFWGDHLPALSA 315 Sbjct: 441 500 Query: 316 GIYTDAGW-----------DQELRLKHETKLMILANFDIGHTPLGTLSPAYLGPAVFKLS 364 Sbjct: 501 - 559 Query: 365 GQTLPPYYKMLEQVRAQLPGLSKNVLIGASG-ELSDLTSEQQ--ALLDDYRMVEYDLLEG 421 Sbjct: 560 619 Query: 422 EGYAADLMF 430 Sbjct: 620 628 >SPy0793 [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Length = 346 Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 0/401 (0%), Positives = 0/401 (0%), Gaps = 29/401 (7%) Query: 32 FAFTGNLRQNLLEQPEGYSRESVEAIAAKYNSLPDTASG--QAAVEQPNILFMMDEAFFD 89 Sbjct: 433 492 Query: 90 PTRLPGITLSDDPLKFIHQAESATPSGYLLSPEFGGNTANVEFEALTGMSMY-FLGDGSI 148 Sbjct: 493 552 Query: 149 PYQQRIVKMSSLPSIVSILKERGYQALALHPFDETFYNRNRVYPVLGFDRF---TSEKDL 205 Sbjct: 553 --- 609 Query: 206 QEAERITPDGYISDKAAVQEAIRELKAADTPTFLHMVTMQNHFPFTKGRNGPNTITAQG- 264 Sbjct: 610 --- 666 Query: 265 -VQAEWKDELETYVQDTKLTDEALSYLQQELKTIERPTIAVFWGDHLPALSAGIYTDAGW 323 Sbjct: 667 ---- 722 Query: 324 DQELRLKHETKLMILANFDIGHTPLGTLSPAYLGPAVFKLSGQTLPPYYKMLEQVRAQLP 383 Sbjct: 723 ------ 776 Query: 384 GLSKNVLIGASGELSDLTSEQQALLDDYRMVEYDLLEGEGY 424 Sbjct: 777 ----- 812 >STM1703_3 [T] COG2200 FOG: EAL domain Length = 251 Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 0/213 (0%), Positives = 0/213 (0%), Gaps = 30/213 (14%) Query: 125 GNTANVEFEALTGMSMYFLGDGSIPYQQRIVKMSSLPSIVSILKERGYQALALHPFDETF 184 Sbjct: 252 ----- 306 Query: 185 YNRNRVYPVLGFDRFTSEKDLQEAERITPDGYISDKAAVQEAIRELKAADTPTFLHMVTM 244 Sbjct: 307 -- 364 Query: 245 QNHFPFTKGRNGPNTITAQGVQAEWKDELET-----YVQDTKLTDEALSYLQQELKTIE- 298 Sbjct: 365 -------- 416 Query: 299 -RPTIAVFWGDHLPALSAGIYTDAGWDQELRLK 330 Sbjct: 417 -------- 441 >STM1703_1 [T] COG2202 FOG: PAS/PAC domain Length = 227 Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 0/213 (0%), Positives = 0/213 (0%), Gaps = 30/213 (14%) Query: 125 GNTANVEFEALTGMSMYFLGDGSIPYQQRIVKMSSLPSIVSILKERGYQALALHPFDETF 184 Sbjct: 252 ----- 306 Query: 185 YNRNRVYPVLGFDRFTSEKDLQEAERITPDGYISDKAAVQEAIRELKAADTPTFLHMVTM 244 Sbjct: 307 -- 364 Query: 245 QNHFPFTKGRNGPNTITAQGVQAEWKDELET-----YVQDTKLTDEALSYLQQELKTIE- 298 Sbjct: 365 -------- 416 Query: 299 -RPTIAVFWGDHLPALSAGIYTDAGWDQELRLK 330 Sbjct: 417 -------- 441 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 32,665,887 Number of extensions: 1372418 Number of successful extensions: 2535 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 2511 Number of HSP's successfully gapped: 19 Length of query: 430 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 321 Effective length of database: 25,807,025 Effective search space: 8284055025 Effective search space used: 8284055025 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)