BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0490.0004.p
         (155 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3448 [G] COG1879 ABC-type sugar transport system, periplasmic ...   181   5e-46
BH3840 [G] COG1879 ABC-type sugar transport system, periplasmic ...    92   4e-19
TM0114 [G] COG1879 ABC-type sugar transport system, periplasmic ...    79   2e-15
AGl1930 [G] COG1879 ABC-type sugar transport system, periplasmic...    67   1e-11
Cgl0030 [G] COG1879 ABC-type sugar transport system, periplasmic...    65   5e-11

>BH3448 [G] COG1879 ABC-type sugar transport system, periplasmic component
          Length = 335

 Score =  181 bits (458), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 86/129 (66%), Positives = 104/129 (80%)

Query: 1   MVTFQSGIDYWKSVLKGFEDAAEELNVSVEYHGSTQHNASEQMTVLEQAIAKKPAGIAIS 60
           M+TFQSG+DYWK  LKGFEDAA+ LNV+VEY G+ Q++  EQ+TVLEQAIAK PAGIAIS
Sbjct: 47  MITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAIS 106

Query: 61  AVNSKLLTATINKAVESGIPVVLFDSGAPDSKAYSFLGTDNFNAGAEAARKMAELXXXXS 120
           A++   LT TINKAV++GIP+VLFDSGAPDS A+SFLGT+N+NAG  AA KMAEL     
Sbjct: 107 AIDPVELTDTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEG 166

Query: 121 PAAKVRLPS 129
             A + LP+
Sbjct: 167 EVAVITLPN 175


>BH3840 [G] COG1879 ABC-type sugar transport system, periplasmic component
          Length = 332

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%)

Query: 10  YWKSVLKGFEDAAEELNVSVEYHGSTQHNASEQMTVLEQAIAKKPAGIAISAVNSKLLTA 69
           YW+ V KG  +A  + +V VEY    + N  EQ+ +++ AI+ K  GI + AVN ++ T 
Sbjct: 59  YWRLVEKGAREAENQFDVLVEYKAPKRSNPEEQLKLIDMAISAKVDGIIVQAVNEEMFTP 118

Query: 70  TINKAVESGIPVVLFDSGAPDSKAYSFLGTDNFNAGAEAARKMAE 114
            INKAV++GIPV+  D+ AP S   +++GTDN+ +G  A + M +
Sbjct: 119 LINKAVDAGIPVITIDTDAPRSNRVAYIGTDNYYSGTIAGKAMLD 163


>TM0114 [G] COG1879 ABC-type sugar transport system, periplasmic component
          Length = 335

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 61/106 (57%)

Query: 10  YWKSVLKGFEDAAEELNVSVEYHGSTQHNASEQMTVLEQAIAKKPAGIAISAVNSKLLTA 69
           YW  V +G + A + L V  ++    + + + Q+ +LE  IA+   GIAI+  +   +  
Sbjct: 44  YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIP 103

Query: 70  TINKAVESGIPVVLFDSGAPDSKAYSFLGTDNFNAGAEAARKMAEL 115
           TI KA+E GIPVV  D+ +PDS  Y ++GTDN+ AG  A   M EL
Sbjct: 104 TIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKEL 149


>AGl1930 [G] COG1879 ABC-type sugar transport system, periplasmic component
          Length = 348

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 10  YWKSVLKGFEDAAEELNVSVEYHGSTQHNASEQMTVLEQAIAKKPAGIAISAVNSKLLTA 69
           YW  V +GF+ AA+ L     + G+ +++ ++Q+   EQ + KKP GI +  + +     
Sbjct: 62  YWVPVFEGFKQAAKALGCEAVFTGTPEYDITKQIASFEQELVKKPKGILLHPMQADPFIE 121

Query: 70  TINKAVESGIPVVLFDSGAPDSKAYSFLGTDNFN----AGAEAARKMAE 114
            INKA+ SG+ V  F + +P SK  +++ +DN      A  E  +K+ E
Sbjct: 122 PINKAIASGVSVTTFAADSPKSKRTAYITSDNVAEAKFAADEIVKKLGE 170


>Cgl0030 [G] COG1879 ABC-type sugar transport system, periplasmic component
          Length = 280

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 5/111 (4%)

Query: 7   GIDYWKSVLKGFEDAAEELNVSVEYHGSTQHNASEQMTVLEQAIAKKPAGIAISAVNSKL 66
           G  +W  V KG EDAA++ NV + Y  S+     EQ  +++ AI  +  GIA++  N++ 
Sbjct: 8   GDTFWDLVRKGAEDAAQKDNVELRY--SSNPEIPEQSNLVQNAIDSRVDGIAMTMPNAQS 65

Query: 67  LTATINKAVESGIPVVLFDSGAPDSKAY---SFLGTDNFNAGAEAARKMAE 114
           L     KAV++GIPVV  ++G  + + Y    F G D   AGA A  ++AE
Sbjct: 66  LGPVAQKAVDAGIPVVGLNAGMNEYQDYGMTGFFGQDESVAGASAGARLAE 116


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.312    0.125    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,580,931
Number of extensions: 339691
Number of successful extensions: 1566
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1565
Number of HSP's successfully gapped: 10
Length of query: 155
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 58
Effective length of database: 27,191,033
Effective search space: 1577079914
Effective search space used: 1577079914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)