BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0489.0020.p (606 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1813 [L] COG0178 Excinuclease ATPase subunit 340 5e-93 BH0714 [L] COG0178 Excinuclease ATPase subunit 269 1e-71 lin2631 [L] COG0178 Excinuclease ATPase subunit 238 2e-62 Cgl1343 [L] COG0178 Excinuclease ATPase subunit 226 8e-59 CAC0503 [L] COG0178 Excinuclease ATPase subunit 214 4e-55 >lin1813 [L] COG0178 Excinuclease ATPase subunit Length = 620 Score = 340 bits (871), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 189/526 (35%), Positives = 303/526 (57%), Gaps = 33/526 (6%) Query: 1 MKHIEVYNAKLHNLKNITTKIPKQQLIVVTXXXXXXXXXXXXDTLHHEGQRLYLEALGIS 60 M +I++ NA ++NLKNI+ +IPK + IV+T D + EG++ YL+++G++ Sbjct: 1 MDYIQIENAYINNLKNISIEIPKNKFIVITGISGSGKSSLAFDLIFEEGRKKYLQSIGMA 60 Query: 61 HDVLHYDSFDMIQGLSPTIAVQQRTVSNLNPRSVVGTATRLLNLMALIYVNEGVEKGSEQ 120 D D + I GLSPT+AV+Q + NPRS VG+ T LLN L++ NEG + SE Sbjct: 61 LD-FGTDYYTNITGLSPTVAVKQNLIRQSNPRSTVGSKTGLLNKFCLLFANEGSYQDSES 119 Query: 121 TEASLRGDVPGMFMFNSPHGSCPACSGRGTITEVNIAKILPPDSESIEAWHQFAYEFPQH 180 + P +F + SP+G C C+G G +++ I+ + ++E Q Sbjct: 120 FSLANDDINPDIFSYLSPNGMCFDCAGTGKQFHIHMENIISSKTVTVEQVFQ-------- 171 Query: 181 KKEEKEYVTKRFANFIQ------FYNLAPETPVSELSGEARDVFMHYRPKRTQSKGNLIF 234 + TK + N +Q F+ P+ + V +Y K + Sbjct: 172 ----QIGSTKGYLNLLQRKYTAYFHEAFSNCPIEIQNELIYGVVDNYSGKTS-------- 219 Query: 235 YGVNVVIEEK-LKKVNLQQFPDLHITRPCTRCHGYRLGEKALSVTLENKHIGQLCRMDVL 293 Y + V+ + L+ ++Q+F I C C+GYR+ ++A + + N H+G++ M ++ Sbjct: 220 YCIERVLHNRYLRNEDVQRFYSQEI---CESCNGYRICDEARMMKIANLHLGEIASMSLI 276 Query: 294 GLTAFFQDYLDVRPHTAFVMHLIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQRLHI 353 + F +Y+++ +AF L + ++ L + + L +L +YREIP+LSGGE+QR+ + Sbjct: 277 KVKEFLDNYIEMNKLSAFGTELSRSLITTLNSLIHIKLGHLTMYREIPTLSGGELQRIFL 336 Query: 354 MSHLSAKVDSIIYIFDEPTAGLHEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQAEYI 413 HL +K+DS+IY+FDEPT+GLHE EK +IIES QS+K GNTV++V HD+ +I+ A++I Sbjct: 337 YDHLESKLDSLIYVFDEPTSGLHESEKQEIIESLQSIKAHGNTVLIVSHDKKIIKAADHI 396 Query: 414 IDFGPKAGEQGGTIVYQGDYARFLDSAESITAKYLLHKPMPPKEYTVAADASTPRLSIRN 473 ID G AG+ GG IVYQG Y+ FL++ S+T+K+L + K + + LSI N Sbjct: 397 IDVGTNAGDLGGEIVYQGSYSEFLNNRHSLTSKFLDYD--MTKSFKKNKQKTKDTLSISN 454 Query: 474 AQTNNLKNINVDIPLQSIVGICGLSGSGKSSLMIDTLIPKLQAALK 519 A NNLKNI+++IP+ +VGI G+SGSGKS+L+ TL+P + LK Sbjct: 455 ANRNNLKNISIEIPINRLVGIAGVSGSGKSTLISKTLVPLCKEQLK 500 >BH0714 [L] COG0178 Excinuclease ATPase subunit Length = 820 Score = 269 bits (687), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 168/567 (29%), Positives = 287/567 (50%), Gaps = 66/567 (11%) Query: 1 MKH-IEVYNAKLHNLKNITTKIPKQQLIVVTXXXXXXXXXXXXDTLHHEGQRLYLEALGI 59 MKH I++ A+ HNLKNI+ KIPK +L+++T DTL E QR Y+E++G+ Sbjct: 1 MKHDIDIRGAREHNLKNISLKIPKNKLVLLTGPSGSGKSTLALDTLQRECQRQYMESMGM 60 Query: 60 SHDVLHYDSFDMIQGLSPTIAVQQRTVSNLNPRSVVGTATRLLNLMALIYVNEG------ 113 + D + D I GLSP+I++ Q ++N NPRS VGT T + + ++Y G Sbjct: 61 TTDAVSKPKVDSIVGLSPSISIGQH-ITNRNPRSTVGTTTDMYTYLRVLYEKLGEQPCPH 119 Query: 114 --------VEKGSEQTEASLRG--DVP-----------GMFMFNSPHGSCPACSGRGTIT 152 V+K + + + D P F FN P G+CP C G G ++ Sbjct: 120 CDKMVPPRVDKEQYEEDGGFKQLIDCPHCHQRFEKLTRSHFSFNKPEGACPTCDGLGNVS 179 Query: 153 EVNIAKILPPDS----ESIEAWHQFAYEFPQHKKEEKEYVTKRFANFIQFYNLAPE--TP 206 E+++ + + + + W K + ++Y ++Y+++ + +P Sbjct: 180 ELDLTAVFQEEQSLKEDGVAIW----------KGQYRDYQLAILQAAAEYYDISLDLDSP 229 Query: 207 VSELSGEARDV-------------FMHYRPKRTQSKGNLIFYGVNVVIEEKLK-KVNLQQ 252 + + +D+ F + +P +T +G F G+ I + K K Sbjct: 230 LKSFNNIQKDLLYYGVESEPFSAHFPNKKPPKTVGQGK--FEGIVTGIWRRYKEKAGQSG 287 Query: 253 FPDLHITRPCTRCHGYRLGEKALSVTLENKHIGQLCRMDVLGLTAFFQDYLDVRPHTAF- 311 +L T+ C CHG RL +++ V + N I ++ + + + + + +F Sbjct: 288 EANLFFTKQCPDCHGERLNKRSRGVLVANTSISRVTKWSLNEILTWLDNLQQRYSDESFQ 347 Query: 312 -VMHLIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQRLHIMSHLSAKVDSIIYIFDE 370 + L+ ++ KL + VGL YL+L R+ +LSGGE QRL + + L + + ++YI DE Sbjct: 348 VIEPLLHDLKTKLTRIVRVGLGYLSLDRQTITLSGGEAQRLRLATILGSGLTGVLYILDE 407 Query: 371 PTAGLHEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQAEYIIDFGPKAGEQGGTIVYQ 430 PTAGLH + +++ + L++ GNTV+V+EHDE ++R A++IID GP AG+ GGT+V Q Sbjct: 408 PTAGLHPKDTHGLLQVMKELRDLGNTVLVIEHDEDMMRGADHIIDIGPGAGKYGGTVVGQ 467 Query: 431 GDYARFLDSAESITAKYLLHKPMPPKEYTVAADASTPRLSIRNAQTNNLKNINVDIPLQS 490 G ++ ++ +SIT +L PP + + L++ + +NLKNI V PL + Sbjct: 468 GTVSQLMEQEQSITGNFL---KKPPTTFHKKRTGNGNHLTVHHVTKHNLKNITVSFPLGT 524 Query: 491 IVGICGLSGSGKSSLMIDTLIPKLQAA 517 ++ + G+SGSGKS+L+ D L A Sbjct: 525 LISVTGVSGSGKSTLVFDVLAAGFNGA 551 Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 98/202 (48%), Gaps = 17/202 (8%) Query: 248 VNLQQFPDLHITRPCTRCHGYRLGEKALSVTLENKHIGQLCRMDVLGLTAFFQDYLDVRP 307 N+ PDL +T C C G R + L +T + I + + + F+ Sbjct: 633 TNMHFLPDLEVT--CPVCKGRRFKDFILDITYNGQTISSILDLTIEESRPLFEH------ 684 Query: 308 HTAFVMHLIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQRLHIMSHLSAKVDS-IIY 366 +K+I + + VGL YL+ + + +LSGGE QRL + L + + +Y Sbjct: 685 --------VKKISSIIELLCEVGLGYLSWGQPVTTLSGGEGQRLKLAKELYKQTSNHTLY 736 Query: 367 IFDEPTAGLHEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQAEYIIDFGPKAGEQGGT 426 + DEPT GLH + ++ L + GNTVI VEH VIR ++++ID GP GE GG Sbjct: 737 LLDEPTTGLHPTDVQNLLLLLNRLVDAGNTVITVEHTLEVIRASDWVIDIGPGGGEDGGQ 796 Query: 427 IVYQGDYARFLDSAESITAKYL 448 +V QG + + ES T +L Sbjct: 797 VVAQGTPEQIVAVKESHTGAFL 818 >lin2631 [L] COG0178 Excinuclease ATPase subunit Length = 956 Score = 238 bits (607), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/412 (34%), Positives = 208/412 (50%), Gaps = 37/412 (8%) Query: 130 PGMFMFNSPHGSCPACSGRGTITEVNIAKILPPDS-----ESIEAWHQFAYEFPQHKKEE 184 P MF FNSP G+CP C G GT EV++ ++P S +I W + Sbjct: 264 PRMFSFNSPFGACPTCDGLGTKLEVDVDTVIPDRSLTLNEGAIVPWRPIS---------- 313 Query: 185 KEYVTKRFANFIQFYNLAPETPVSELSGEARDV----------FMHYRPKRTQSKGNLI- 233 +Y + A+ + + + +TP+ ELS EA D+ + Y+ ++ I Sbjct: 314 SQYYPQMLASACKEFGIDMDTPIEELSKEALDIVLNGSKDKEFYFEYKNDFGMTRETWIP 373 Query: 234 FYGVNVVIEEKLKKVN----LQQFPDLHITRPCTRCHGYRLGEKALSVTLENKHIGQLCR 289 F G+ IE + ++ N Q PC C GYRL E+ LSV + N HIGQ+ Sbjct: 374 FEGILPNIERRYRETNSDFTRDQMAQYMTDLPCPSCKGYRLKEETLSVKVNNHHIGQISE 433 Query: 290 MDVLGLTAFFQDYLDVRPHTAFVMHLIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQ 349 + FF T + KE+ +L ++ VGL YL + R +LSGGE Q Sbjct: 434 FSINEALDFFDSLELSEKETQIAAPIFKEVRARLGFLKNVGLDYLTMSRAAGTLSGGEAQ 493 Query: 350 RLHIMSHLSAKVDSIIYIFDEPTAGLHEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQ 409 R+ + + + +++ ++YI DEP+ GLH+ + ++I + QS+++ GNT+IVVEHDE + Sbjct: 494 RIRLATQIGSRLTGVLYILDEPSIGLHQRDNDRLINTLQSMRDIGNTLIVVEHDEDTMMA 553 Query: 410 AEYIIDFGPKAGEQGGTIVYQGDYARFLDSAESITAKYLLHK---PMPPKEYTVAADAST 466 A+Y+ID GP AGE GG IV G + SIT YL K P+P K + Sbjct: 554 ADYLIDIGPGAGEHGGRIVAAGTPEEVAKNKNSITGDYLSGKKFIPVPAKRRK----GNG 609 Query: 467 PRLSIRNAQTNNLKNINVDIPLQSIVGICGLSGSGKSSLMIDTLIPKLQAAL 518 L I A+ NNLKN+N IPL + + G+SGSGKSSL+ + L L L Sbjct: 610 LELEIVGAKANNLKNVNAKIPLATFSCVTGVSGSGKSSLVNEVLRKALARKL 661 Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 114/209 (54%), Gaps = 20/209 (9%) Query: 247 KVNLQQFPDLHITRPCTRCHGYRLGEKALSVTLENKHIGQLCRMDVLGLTAFFQDYLDVR 306 K+ + PD+++ PC CHG R + L + + K+I ++ M V +F + + Sbjct: 748 KIEMHFLPDVYV--PCEVCHGKRYNGETLDIRYKGKNIAEVLEMTVEEGLEYFTN----Q 801 Query: 307 PHTAFVMHLIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQRLHIMSHLSAKVD-SII 365 P A KL + VGL Y+ L + +LSGGE QR+ + S L + + Sbjct: 802 PRIAR----------KLQTIVDVGLGYIRLGQPATTLSGGEAQRVKLASELHKRSNGKSF 851 Query: 366 YIFDEPTAGLHEVEKAKIIESFQSL-KEQGNTVIVVEHDESVIRQAEYIIDFGPKAGEQG 424 YI DEPT GLH + ++++ Q L +E G+TV+V+EH+ VI+QA+Y+ID GP+ G+ G Sbjct: 852 YILDEPTTGLHADDIGRLLKVLQRLVEENGDTVLVIEHNLDVIKQADYLIDLGPEGGDGG 911 Query: 425 GTIVYQGDYARFLDSAESITAKYLLHKPM 453 G I+ G + S +S T KYL KP+ Sbjct: 912 GQIIATGTPEKIARSKKSYTGKYL--KPI 938 Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 13/133 (9%) Query: 2 KHIEVYNAKLHNLKNITTKIPKQQLIVVTXXXXXXXXXXXXDTLHHEGQRLYLEALGISH 61 + I + A+ HNLKNI +IP+ +L+V+T DT++ EGQR Y+E+L Sbjct: 4 EKIVIQGARAHNLKNIDVEIPRDKLVVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 63 Query: 62 ----DVLHYDSFDMIQGLSPTIAVQQRTVSNLNPRSVVGTATRLLNLMALIYV------- 110 + D+I+GLSP I++ Q+T S NPRS VGT T + + + L+Y Sbjct: 64 RQFLGQMDKPDVDLIEGLSPAISIDQKTTSR-NPRSTVGTVTEIHDYLRLLYARVGHPVC 122 Query: 111 -NEGVEKGSEQTE 122 N G+E S+ E Sbjct: 123 PNHGIEITSQTIE 135 >Cgl1343 [L] COG0178 Excinuclease ATPase subunit Length = 949 Score = 226 bits (576), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 148/427 (34%), Positives = 226/427 (52%), Gaps = 42/427 (9%) Query: 130 PGMFMFNSPHGSCPACSGRGTITEVNIAKILP----PDSESIEAWHQFAYEFPQHKKEEK 185 P F FNSP+G+CPAC G G TEV+I I+P P +++++ W+ P H Sbjct: 270 PRAFSFNSPYGACPACDGLGVRTEVDIDLIIPDPDAPATKAVQPWNSS----PNHS---- 321 Query: 186 EYVTKRFANFIQFYNLAPETPVSELS---------GEARDVFMHYRPKRTQSKG-NLIFY 235 Y K + PETP SEL+ G +V + Y+ + + + F Sbjct: 322 -YFEKLIEGLAKALGFDPETPYSELTAAQKKALVYGSKEEVSVRYKNRYGRVRSWTAPFE 380 Query: 236 GVNVVIEEKLKKVNLQQFPD--LHITR--PCTRCHGYRLGEKALSVTLENKHIGQLCRMD 291 GV + KL++ + + D L TR PC C G RL + L+V L++ G L Sbjct: 381 GVMGYFDRKLEQTDSETQKDRLLGYTREVPCPTCKGARLKPEILAVRLDSGSHGALS--- 437 Query: 292 VLGLTAF-------FQDYLDVRPHTAFVM-HLIKEILGKLACMETVGLSYLNLYREIPSL 343 + GLTA F D L + + ++KEI +L + VGLSYL L R +L Sbjct: 438 IAGLTALSVHEAFEFLDNLTLGKREEMIAGAVLKEIHARLKFLLDVGLSYLTLDRAAGTL 497 Query: 344 SGGEIQRLHIMSHLSAKVDSIIYIFDEPTAGLHEVEKAKIIESFQSLKEQGNTVIVVEHD 403 SGGE QR+ + + + + + ++Y+ DEP+ GLH+ + ++I + + L++ GNT+IVVEHD Sbjct: 498 SGGEAQRIRLATQIGSGLAGVLYVLDEPSIGLHQRDNQRLITTLEHLRDIGNTLIVVEHD 557 Query: 404 ESVIRQAEYIIDFGPKAGEQGGTIVYQGDYARFLDSAESITAKYLLHKPMPPKEYTVAAD 463 E IR+A++++D GP+AGE GG +VYQG+ LD ES+T YL + T Sbjct: 558 EDTIRRADWLVDIGPRAGEFGGEVVYQGEPKGILDCEESLTGAYLSGRRTLGVPDTRREI 617 Query: 464 ASTPRLSIRNAQTNNLKNINVDIPLQSIVGICGLSGSGKSSLMIDTLIPKLQAALKARA- 522 +L + A+ NNL+ I+V IPL + I G+SGSGKS+L ++ ++ K+ A RA Sbjct: 618 DKERQLKVVGARENNLQGIDVKIPLGVLCCITGVSGSGKSTL-VNQILAKVLANKLNRAR 676 Query: 523 --PGNKR 527 PG + Sbjct: 677 QVPGRAK 683 Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 111/203 (54%), Gaps = 17/203 (8%) Query: 247 KVNLQQFPDLHITRPCTRCHGYRLGEKALSVTLENKHIGQLCRMDVLGLTAFFQDYLDVR 306 K+ + PD+++ PC C G R + L V + K+I ++ M + FF+ Sbjct: 759 KIEMNFLPDVYV--PCEVCDGQRYNRETLEVKYKGKNIAEVLGMPISEAADFFE------ 810 Query: 307 PHTAFVMHLIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQRLHIMSHLSAKVDS-II 365 P T+ +L A + VGL Y+ L + +LSGGE QR+ + + L + + + Sbjct: 811 PITSIHRYL--------ATLVDVGLGYVRLGQAATTLSGGEAQRVKLAAELQKRSNGRTV 862 Query: 366 YIFDEPTAGLHEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQAEYIIDFGPKAGEQGG 425 YI DEPT GLH + K++ + L ++GN+VI++EH+ VI+ A++I+D GP+ G GG Sbjct: 863 YILDEPTTGLHFEDIRKLMMVIEGLVDKGNSVIIIEHNLDVIKAADWIVDMGPEGGSGGG 922 Query: 426 TIVYQGDYARFLDSAESITAKYL 448 T+V +G + + A S T ++L Sbjct: 923 TVVAEGTPEQVAEVAGSYTGQFL 945 Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 5/112 (4%) Query: 6 VYNAKLHNLKNITTKIPKQQLIVVTXXXXXXXXXXXXDTLHHEGQRLYLEALGISHDV-- 63 V A+ HNLK + +P+ ++V T DT+ EGQR Y+E+L + Sbjct: 7 VRGAREHNLKGVDIDLPRDSMVVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARMFL 66 Query: 64 --LHYDSFDMIQGLSPTIAVQQRTVSNLNPRSVVGTATRLLNLMALIYVNEG 113 + D+I GLSP +++ Q++ +N NPRS VGT T + + + L+Y G Sbjct: 67 GQMDKPDVDLIDGLSPAVSIDQKS-TNRNPRSTVGTITEVYDYLRLLYARAG 117 Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 34/48 (70%) Query: 468 RLSIRNAQTNNLKNINVDIPLQSIVGICGLSGSGKSSLMIDTLIPKLQ 515 RL +R A+ +NLK +++D+P S+V GLSGSGKSSL DT+ + Q Sbjct: 4 RLVVRGAREHNLKGVDIDLPRDSMVVFTGLSGSGKSSLAFDTIFAEGQ 51 >CAC0503 [L] COG0178 Excinuclease ATPase subunit Length = 939 Score = 214 bits (544), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 126/404 (31%), Positives = 207/404 (51%), Gaps = 20/404 (4%) Query: 130 PGMFMFNSPHGSCPACSGRGTITEVNIAKILPPDSESIEAWHQFAYEFPQHKKEEKEYVT 189 P MF FN+P G C C G GT+ E++ ++P S+SI + + + +E+ + Sbjct: 264 PSMFSFNAPFGKCDVCDGIGTLLEIDEDLVIPDKSKSI--MEGAIAPWGEGRLKEESWTF 321 Query: 190 KRFANFIQFYNLAPETPVSELSGEARDVFMHYRP-----KRTQSKGNLIFYGVNVVIEEK 244 + Y L P+ + + ++ ++ P + ++F I + Sbjct: 322 GVLKALSKKYKLDINKPIEDYDEKTLNILLYGAPDVLKVNYVKDSQEMVFNHHYEGIINQ 381 Query: 245 LKKVNLQQFPDL--------HITRPCTRCHGYRLGEKALSVTLENKHIGQLCRMDVLGLT 296 +K+ ++ D PC +C G RL ++ L++T+ NK+I + C M + Sbjct: 382 MKRRYMESNSDYIKSEIENYMSNNPCPKCKGARLKKEVLAITVGNKNIFEFCSMPIREEV 441 Query: 297 AFFQDYLDVRPHTAFVMHLIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQRLHIMSH 356 +F H ++KEI +L + VGL YLNL RE +LSGGE QR+ + + Sbjct: 442 SFIDTLELSNKHKIISAQIVKEIKSRLEFLINVGLDYLNLAREARTLSGGESQRIRLATQ 501 Query: 357 LSAKVDSIIYIFDEPTAGLHEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQAEYIIDF 416 + + + ++YI DEP+ GLH+ + ++I + ++LK+ GNT+IVVEHDE I+ A++I+D Sbjct: 502 IGSSLVGVLYILDEPSIGLHQRDNDRLIATMKNLKDIGNTLIVVEHDEDTIKAADFIVDI 561 Query: 417 GPKAGEQGGTIVYQGDYARFLDSAESITAKYL--LHKPMPPKEYTVAADASTPRLSIRNA 474 GP AGE GG I+ G + ESIT +YL + K PKE +A + I A Sbjct: 562 GPGAGEHGGEIIAAGSLEDIKNCKESITGQYLTGVKKIEVPKE---RREAGKNFIEIVGA 618 Query: 475 QTNNLKNINVDIPLQSIVGICGLSGSGKSSLMIDTLIPKLQAAL 518 + NNLKN+NV P+ + G+SGSGKS+L+ + L L + Sbjct: 619 KENNLKNVNVKFPVGLFTCVTGVSGSGKSTLVNEILYKALNKKI 662 Score = 127 bits (318), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 108/203 (53%), Gaps = 17/203 (8%) Query: 247 KVNLQQFPDLHITRPCTRCHGYRLGEKALSVTLENKHIGQLCRMDVLGLTAFFQDYLDVR 306 ++ +Q D+++ PC C G R + L + ++K+I L M V FF++ Sbjct: 749 RIEMQFLSDVYV--PCDVCKGKRYNRETLEIKYKDKNIDDLLNMTVEDALKFFEN----- 801 Query: 307 PHTAFVMHLIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQRLHIMSHLSAK-VDSII 365 + I KL + VGL Y+ L + LSGGE QR+ + LS + + Sbjct: 802 ---------LPRIKNKLQTLADVGLGYVRLGQPSTQLSGGEAQRIKLAYELSKRSTGKTL 852 Query: 366 YIFDEPTAGLHEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQAEYIIDFGPKAGEQGG 425 YI DEPT GLH + K+I Q L + GNTV+V+EH+ VI+ A+YI+D GP+ GE+GG Sbjct: 853 YILDEPTTGLHTDDVKKLISILQRLTDMGNTVVVIEHNLDVIKCADYIVDLGPEGGEKGG 912 Query: 426 TIVYQGDYARFLDSAESITAKYL 448 TI+ G + ++ S T +YL Sbjct: 913 TILCSGTPEQVAQNSSSYTGQYL 935 Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 7/116 (6%) Query: 4 IEVYNAKLHNLKNITTKIPKQQLIVVTXXXXXXXXXXXXDTLHHEGQRLYLEALGISHDV 63 I + AK+HNLKN+ +P+ + +V T DTL+ EGQR Y+E+L S+ Sbjct: 5 IVIKGAKVHNLKNVDLTVPRNEFVVFTGLSGSGKSSLAFDTLYAEGQRRYMESLS-SYAR 63 Query: 64 LHYDSFD-----MIQGLSPTIAVQQRTVSNLNPRSVVGTATRLLNLMALIYVNEGV 114 D I+GLSP I++ Q+T NPRS VGT T + + + L+Y GV Sbjct: 64 QFLGQMDKPNVEYIEGLSPAISIDQKTTGR-NPRSTVGTVTEIYDYLRLLYAKIGV 118 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 42,619,640 Number of extensions: 1752894 Number of successful extensions: 9879 Number of sequences better than 1.0e-05: 70 Number of HSP's gapped: 10300 Number of HSP's successfully gapped: 99 Length of query: 606 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 494 Effective length of database: 25,461,023 Effective search space: 12577745362 Effective search space used: 12577745362 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 119 (50.4 bits)