BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0487.0004.p
         (150 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1285 [K] COG1846 Transcriptional regulators                          87   1e-17
Rv1049 [K] COG1846 Transcriptional regulators                          72   2e-13
MT1079 [K] COG1846 Transcriptional regulators                          72   2e-13
AGc1559 [K] COG1846 Transcriptional regulators                         59   3e-09

>PA1285 [K] COG1846 Transcriptional regulators
          Length = 149

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 70/116 (60%)

Query: 19  CTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTVLGPVSVSELALEMRLDRTTIV 78
           C C  LRR++ +V+  YD  L  +GL ++QFSLL+HL  L   S+SELA  M LDR+T+ 
Sbjct: 18  CLCTKLRRAARSVSRFYDEALADTGLKVAQFSLLRHLRRLDRPSISELAEAMGLDRSTLG 77

Query: 79  RNLKALEQCGYVQDTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQASLGEE 134
           RNL+ LE  G ++ T     RNR + LT +G  A       WE+AQR L   LGEE
Sbjct: 78  RNLRVLEGDGLLRLTGGEDQRNRLVELTPAGLDALERGTPAWEDAQRRLAGRLGEE 133


>Rv1049 [K] COG1846 Transcriptional regulators
          Length = 148

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 5/124 (4%)

Query: 15  AVSACTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTV----LG-PVSVSELALE 69
           A   C C   RR++  +   YDR L PSGL  +QFS L  +++     G  +++SELA  
Sbjct: 6   AFDECACYTTRRAARQLGQAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAAR 65

Query: 70  MRLDRTTIVRNLKALEQCGYVQDTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQA 129
           + ++RTT+ RNL+ + + G V+  + A +R + + LT  GRAA   A  LW   Q  + A
Sbjct: 66  IGVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKAVPLWRGVQAEVTA 125

Query: 130 SLGE 133
           S+G+
Sbjct: 126 SVGD 129


>MT1079 [K] COG1846 Transcriptional regulators
          Length = 148

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 5/124 (4%)

Query: 15  AVSACTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTV----LG-PVSVSELALE 69
           A   C C   RR++  +   YDR L PSGL  +QFS L  +++     G  +++SELA  
Sbjct: 6   AFDECACYTTRRAARQLGQAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAAR 65

Query: 70  MRLDRTTIVRNLKALEQCGYVQDTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQA 129
           + ++RTT+ RNL+ + + G V+  + A +R + + LT  GRAA   A  LW   Q  + A
Sbjct: 66  IGVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKAVPLWRGVQAEVTA 125

Query: 130 SLGE 133
           S+G+
Sbjct: 126 SVGD 129


>AGc1559 [K] COG1846 Transcriptional regulators
          Length = 370

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 8/120 (6%), Positives = 18/120 (15%), Gaps = 1/120 (0%)

Query: 17  SACTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTVLGPVSVSELALEMRLDRTT 76
                   +      T L            +       L  L  ++           R  
Sbjct: 17  GWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQF 76

Query: 77  IVRNLKALEQCGYVQ-DTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQASLGEED 135
              N               V       L ++ +    +             +      + 
Sbjct: 77  FETNSVPFRISPAQGKSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDG 136


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,945,975
Number of extensions: 310862
Number of successful extensions: 901
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 916
Number of HSP's successfully gapped: 5
Length of query: 150
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 53
Effective length of database: 27,191,033
Effective search space: 1441124749
Effective search space used: 1441124749
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)