BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0487.0003.p (387 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc4262 [G] COG4214 ABC-type xylose transport system, permease c... 353 3e-97 BMEII0362 [G] COG4214 ABC-type xylose transport system, permease... 343 3e-94 SMb20893 [G] COG4214 ABC-type xylose transport system, permease ... 338 8e-93 mll5656 [G] COG4214 ABC-type xylose transport system, permease c... 300 4e-81 SMb20903 [G] COG4214 ABC-type xylose transport system, permease ... 151 1e-36 >AGc4262 [G] COG4214 ABC-type xylose transport system, permease component Length = 248 Score = 353 bits (906), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 0/383 (0%), Positives = 0/383 (0%) Query: 3 AISEIFKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLV 62 + + + I D ++ + + + +++ Sbjct: 15 GLGTRMRPITDTIPKPLVKIAGKPMIDYALDALVEAGAETIVVNVHHHAEQMISHLGHRT 74 Query: 63 IITGHIDLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIKIP 122 I + G L+ + + + +G + A + Sbjct: 75 DAEILISDERTQLMNSGGGLAKGLKLLKPGPVFVMNADLFWIGERLNAVSNLRKLAQFLD 134 Query: 123 AFIVTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDLSGGSSLNXXXXXXXXXX 182 + +A + + T + + + + Sbjct: 135 PARMDMALLCVDMDRTTGHNGKRDFNLAGEGKLTRYRDGDANPVVYAGAIAMDSRLLDDA 194 Query: 183 XXXXXYQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPNXXXXXX 242 Sbjct: 195 254 Query: 243 XXXXXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALSGLVFAA 302 Sbjct: 255 314 Query: 303 RLNSATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVGLGVD 362 Sbjct: 315 374 Query: 363 WQQGIKGLVLLLAVGFDIYNKSK 385 Sbjct: 375 397 >BMEII0362 [G] COG4214 ABC-type xylose transport system, permease component Length = 396 Score = 343 bits (880), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 177/384 (46%), Positives = 244/384 (63%), Gaps = 1/384 (0%) Query: 3 AISEIFKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLV 62 ++ K N+R+ GM+++L+ I +FF I+T G+L+KPLN+TNL+LQNSYI+++A+GM+L+ Sbjct: 13 SVGRYLKNNLRESGMLLSLVAIMIFFHIVTGGVLMKPLNLTNLVLQNSYIVIMALGMLLI 72 Query: 63 IITGHIDLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIKIP 122 I+TGHIDLSVGSV FIGAL+A+MMV + + +A IL L++G L+GA QGFWVAY IP Sbjct: 73 IVTGHIDLSVGSVCGFIGALAAVMMVKLGIPFPIAAILCLIVGGLIGAIQGFWVAYFNIP 132 Query: 123 AFIVTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDLSGG-SSLNXXXXXXXXX 181 +FIVTLAGML+F+GL + VL GQS+ PFP FQK+SSGFIP++ G + Sbjct: 133 SFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLSSGFIPEVIGTFDGVYLTSLIIGVL 192 Query: 182 XXXXXXYQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPNXXXXX 241 +Q R+R + + E L V K + I +++++ + G+PN Sbjct: 193 LAVFLIWQSMRSRARHIAHEVETEPFGLFVVKCILYFVAIAYLSLLISSHRGMPNVLIIM 252 Query: 242 XXXXXXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALSGLVFA 301 Y+F+ N +GR IYA+GGN AA LSGVKT+R+TF FVNMGVLAAL+GLVFA Sbjct: 253 AVLIAAYAFLTNRTVIGRQIYAVGGNRHAAKLSGVKTERLTFLTFVNMGVLAALAGLVFA 312 Query: 302 ARLNSATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVGLGV 361 ARLN+ATPKAG FELD S++G+G+ Sbjct: 313 ARLNTATPKAGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGI 372 Query: 362 DWQQGIKGLVLLLAVGFDIYNKSK 385 D+QQ IKG+VLL AV D+YN+ + Sbjct: 373 DYQQVIKGIVLLGAVCIDVYNQKR 396 >SMb20893 [G] COG4214 ABC-type xylose transport system, permease component Length = 404 Score = 338 bits (868), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 173/389 (44%), Positives = 244/389 (62%), Gaps = 6/389 (1%) Query: 3 AISEIFKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLV 62 +I + + NIR+YG+++AL+ I +FFQ +T+G+L +P+N+TNL+LQNS+I+++A+GM+L+ Sbjct: 13 SIGDYLRNNIREYGLLVALVIIMLFFQFVTNGVLFRPVNITNLVLQNSFIVIMALGMLLI 72 Query: 63 IITGHIDLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIKIP 122 I+ GHIDLSVGS+ AFIGA+SAIM+V + + + L++G ++GA QG+WVAY KIP Sbjct: 73 IVAGHIDLSVGSIVAFIGAISAIMLVKWGLPAFVVIPACLIVGGIMGAAQGYWVAYQKIP 132 Query: 123 AFIVTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDL------SGGSSLNXXXX 176 +FIVTLAGML+FRG+T +VL G+ I PFPK FQ +S+GF+PD S + N Sbjct: 133 SFIVTLAGMLVFRGMTYVVLGGRPIGPFPKDFQILSTGFVPDFLYFLSPSPETIKNMVAL 192 Query: 177 XXXXXXXXXXXYQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPN 236 + RNR+I+ ++G E + A + +V L+ Y G+PN Sbjct: 193 VAVLLLVGYAIFAGVRNRRINEQHGTENEPFVFFAIQMAVISLVALFLGFQLSTYRGLPN 252 Query: 237 XXXXXXXXXXXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALS 296 Y+FV T+GR IYA+GGNEKA LSG+ T+R+TF+ FVNMG LAAL+ Sbjct: 253 VLVVMGVLIAVYTFVTTRSTIGRRIYAMGGNEKATKLSGINTERLTFYAFVNMGALAALA 312 Query: 297 GLVFAARLNSATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSL 356 G++ ARLNSATPKAG FELD S+ Sbjct: 313 GMIITARLNSATPKAGVGFELDVIAACFIGGASASGGVGKITGAVIGAFIMGVMNNGMSI 372 Query: 357 VGLGVDWQQGIKGLVLLLAVGFDIYNKSK 385 +G+G+D+QQ IKGLVLL AV FD+YNK+K Sbjct: 373 MGIGIDYQQLIKGLVLLAAVFFDVYNKNK 401 >mll5656 [G] COG4214 ABC-type xylose transport system, permease component Length = 428 Score = 300 bits (767), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 173/402 (43%), Positives = 229/402 (56%), Gaps = 24/402 (5%) Query: 8 FKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLVIITGH 67 N+R+YG+IIALI I +FFQ T G L KP+N++NL+ QNS+I+V+A+GM+LVI++G+ Sbjct: 26 LTTNLREYGLIIALIVIMLFFQFTTSGTLFKPVNLSNLVQQNSFIIVMALGMLLVIVSGY 85 Query: 68 IDLSVGSVAAFIGALSAIMMVDMQM----NPVLAVILSLLMGALVGAWQGFWVAYIKIPA 123 IDLSVGSVA FIGAL+A MMV Q+ NP++ I+ L++G L+GA QG+W+AY +IP+ Sbjct: 86 IDLSVGSVAGFIGALAANMMVIWQLGPLSNPLVVSIVCLIVGGLIGAAQGYWIAYHRIPS 145 Query: 124 FIVTLAGMLLFRGLTMIVL-NGQSIAPFPKSFQKISSGFIPDLSG--------------- 167 FIVTLAGML+FRG+ +L G S+ P P F+ +SSGFIPD+ G Sbjct: 146 FIVTLAGMLIFRGICQALLGGGSSVGPLPDGFKALSSGFIPDVIGPLTLIPPTVNAAGKT 205 Query: 168 --GSSLNXXXXXXXXXXXXXXXYQEF--RNRKISVKYGFEQSSVWLSVAKAAALVIVINL 223 GS L Y F R R+ ++G+E L V K + Sbjct: 206 IVGSGLTLHMTTIVLGLIAVVAYAYFGVRTRRKRERHGYEAEPFPLFVIKTLVASALALF 265 Query: 224 FTMVLAQYNGIPNXXXXXXXXXXXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTF 283 A Y G+P + FV MT+GR IYA+GGN KAA LSG+ T+R+T Sbjct: 266 LVYEFASYRGLPVVLLVMGVLISLFVFVTKRMTIGRRIYAMGGNPKAAQLSGINTERLTL 325 Query: 284 WVFVNMGVLAALSGLVFAARLNSATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXX 343 VF+NMGVL+AL GL+ AARL A P AG ELD Sbjct: 326 LVFINMGVLSALGGLIIAARLGQAVPAAGLGSELDVIAAVFIGGASAMGGVGQVIGAVVG 385 Query: 344 XXXXXXXXXXXSLVGLGVDWQQGIKGLVLLLAVGFDIYNKSK 385 S++G+ VDWQQ +KGLVLL AV FD+YNK+K Sbjct: 386 GFIMGVMNNGMSIMGVNVDWQQVVKGLVLLGAVIFDVYNKNK 427 >SMb20903 [G] COG4214 ABC-type xylose transport system, permease component Length = 453 Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 115/349 (32%), Positives = 173/349 (49%), Gaps = 51/349 (14%) Query: 11 NIRQYGMIIALIFISVFFQILT----DGILLKPLNVTNLILQNSYILVLAIGMVLVIITG 66 + R GM+ ALI I + FQ++T DG+ LKP N+ NL +Q S + V+A GMVLVI+T Sbjct: 43 DTRLLGMVGALIIIWLGFQVMTGGLFDGLFLKPRNLWNLTVQTSSVAVMATGMVLVIVTR 102 Query: 67 HIDLSVGSVAAFIGALSAIMMVDMQMNP-----------VLAVILSLLMGALVGAWQGFW 115 +IDLSVGSV F G + ++ Q+ P + + + +G +GA G Sbjct: 103 NIDLSVGSVLGFCGMIMGVL--QAQVLPQYLGLGHPATWAITLACGIAVGGAIGALHGSI 160 Query: 116 VAYIKIPAFIVTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDLSGGSSLNXXX 175 +A++ +PAFIVTL G+L++RG T V +GQ++AP +F+ + G + S G++ + Sbjct: 161 IAFLNVPAFIVTLGGLLVWRGATWFVTSGQTVAPMDATFRLMGGG--TEGSIGATASWIV 218 Query: 176 XXXXXXXXXXXXYQEFRNRKISVKYGFEQSSVW-------LSVAKAAALVIVINLF---- 224 + RK ++GF VW L A V V N + Sbjct: 219 GSLACIAIVGAILNSRKQRK---RFGFPLRPVWAEYFLSILGCALVLGAVAVANHYYWPV 275 Query: 225 --TMVLAQYNGI--PN-----------XXXXXXXXXXXYSFVMNHMTMGRHIYALGGNEK 269 A NGI P+ +F+ + GR+++ALGGN + Sbjct: 276 NIARRYADANGIAWPDGGLQISHGIAIPVLVAIVVGIVMTFIATRLRFGRYVFALGGNPE 335 Query: 270 AASLSGVKTKRVTFWVFVNMGVLAALSGLVFAARLNSATPKAGTNFELD 318 AA L+G+KT+ VT +F MGVL A++ + ARLN+AT G ELD Sbjct: 336 AAELAGIKTRWVTVKIFTLMGVLCAIAAAISTARLNAATNAQG---ELD 381 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.140 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,475,786 Number of extensions: 718948 Number of successful extensions: 3122 Number of sequences better than 1.0e-05: 92 Number of HSP's gapped: 3028 Number of HSP's successfully gapped: 135 Length of query: 387 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 279 Effective length of database: 25,922,359 Effective search space: 7232338161 Effective search space used: 7232338161 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 117 (49.7 bits)