BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0487.0002.p (509 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3441 [G] COG1129 ABC-type sugar transport system, ATPase compo... 717 0.0 AGc4264 [G] COG1129 ABC-type sugar transport system, ATPase comp... 662 0.0 BMEII0361 [G] COG1129 ABC-type sugar transport system, ATPase co... 599 e-171 ECs4450 [G] COG1129 ABC-type sugar transport system, ATPase comp... 441 e-123 xylG [G] COG1129 ABC-type sugar transport system, ATPase component 440 e-123 >BH3441 [G] COG1129 ABC-type sugar transport system, ATPase component Length = 517 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/509 (68%), Positives = 421/509 (82%) Query: 1 MSEIILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTY 60 M +LEM+ ITK FPGVKAL++VNL+V+ GEIHAL GENGAGKSTLMKVLSGVYPHGTY Sbjct: 3 MPNCLLEMRNITKAFPGVKALNNVNLKVEQGEIHALVGENGAGKSTLMKVLSGVYPHGTY 62 Query: 61 EGDILFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNET 120 EGDILF+G+VCQFKDIK+SE LGIVIIHQELAL+P LSI+ENIFLGNE+A++GVI+WN+T Sbjct: 63 EGDILFEGRVCQFKDIKESEQLGIVIIHQELALVPELSIAENIFLGNEQAKNGVIDWNQT 122 Query: 121 TVKTKELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 + +LL+ VGLS+SP T IGVGKQQLVEIAKALSK+VKLLILDEPTAALNE+DS+ Sbjct: 123 ITEAAKLLKKVGLSDSPRTLAMNIGVGKQQLVEIAKALSKKVKLLILDEPTAALNEEDSQ 182 Query: 181 NLLRLILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKG 240 NLL L+LE K++G+ SIIISHKLNEI VAD +TILRDGQ+I TL ++ EVTED IIKG Sbjct: 183 NLLHLLLEFKKQGMTSIIISHKLNEISYVADHLTILRDGQSIETLSLQSGEVTEDRIIKG 242 Query: 241 MVGRDLTNRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMG 300 MVGRDL NR+P R P +G+ I E+ W V P DR ++ ++NL+++RGE+VG+AGLMG Sbjct: 243 MVGRDLENRFPPREPKIGDVILEVNHWHVDDPLHPDRSLIKDVNLYLKRGEIVGVAGLMG 302 Query: 301 AGRTELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLILIDD 360 AGRTELAMS+FGKSYG+ I GQL G E+ ++ + AID GLAYVTEDRK YGLILIDD Sbjct: 303 AGRTELAMSIFGKSYGKNIRGQLIKDGKEIKVHSVKDAIDHGLAYVTEDRKTYGLILIDD 362 Query: 361 XXXXXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLS 420 GV+++ EV AE++R+K+NI+TPSI QKT NLSGGNQQKVVLS Sbjct: 363 IKHNISLTSLEKLSKNGVVDKTREVKEAEDFRKKMNIRTPSIDQKTGNLSGGNQQKVVLS 422 Query: 421 KWIYAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYT 480 KWI + PDILILDEPTRGIDVGAKYEIYS+I+ LAA+GK VLVISSELPE++G+ DRIY Sbjct: 423 KWILSGPDILILDEPTRGIDVGAKYEIYSVIHELAAQGKAVLVISSELPELLGLSDRIYA 482 Query: 481 MCEGRISGEVERQDASQELLMKYMTRSRG 509 +CEGRI+GEV R++A+QE+LMKYMTR+ G Sbjct: 483 LCEGRITGEVTREEANQEILMKYMTRTGG 511 >AGc4264 [G] COG1129 ABC-type sugar transport system, ATPase component Length = 248 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 0/500 (0%), Positives = 0/500 (0%) Query: 8 MKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTYEGDILFQ 67 M +T V A + AGK + L + G + Sbjct: 1 MTTMTIKNAMVLAAGLGTRMRPITDTIPKPLVKIAGKPMIDYALDALVEAGAETIVVNVH 60 Query: 68 GQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNETTVKTKEL 127 Q + ++I E + L + + + + L Sbjct: 61 HHAEQMISHLGHRTDAEILISDERTQLMNSGGGLAKGLKLLKPGPVFVMNADLFWIGERL 120 Query: 128 LQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSENLLRLIL 187 L + A V++ + K L + ++ Sbjct: 121 NAVSNLRKLAQFLDPARMDMALLCVDMDRTTGHNGKRDFNLAGEGKLTRYRDGDANPVVY 180 Query: 188 ELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKGMVGRDLT 247 + ++ + + + + Sbjct: 181 AGAIAMDSRLLDDAPADAFNLNIYFDRAIEKDRLFGLSLDGHWITVGTPDAIDDAESIIR 240 Query: 248 NRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMGAGRTELA 307 Sbjct: 241 300 Query: 308 MSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLILIDDXXXXXXX 367 Sbjct: 301 360 Query: 368 XXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLSKWIYAQP 427 Sbjct: 361 420 Query: 428 DILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYTMCEGRIS 487 Sbjct: 421 480 Query: 488 GEVERQDASQELLMKYMTRS 507 Sbjct: 481 500 >BMEII0361 [G] COG1129 ABC-type sugar transport system, ATPase component Length = 529 Score = 599 bits (1544), Expect = e-171, Method: Compositional matrix adjust. Identities = 295/505 (58%), Positives = 379/505 (75%) Query: 5 ILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTYEGDI 64 +LEM+GI K+F VKALSDVN V GEIHA GENGAGKSTLMKVLSGVYPHG+YEG I Sbjct: 23 LLEMRGINKSFGVVKALSDVNFTVMPGEIHAFVGENGAGKSTLMKVLSGVYPHGSYEGAI 82 Query: 65 LFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNETTVKT 124 + G+ QF+DI DSE+LGIVIIHQELALIP +SI+ENIFL N A GVI+ + +T Sbjct: 83 YYDGEERQFRDINDSEALGIVIIHQELALIPLMSIAENIFLVNPPASRGVIDRSAVHKRT 142 Query: 125 KELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSENLLR 184 +ELL+ VGL+E+P T ++ IG+GKQQLVEIAKALSK V+LLILDEPTA+LNE+DS LL Sbjct: 143 RELLKKVGLAETPDTLITDIGIGKQQLVEIAKALSKRVRLLILDEPTASLNENDSAALLA 202 Query: 185 LILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKGMVGR 244 L+ E + +GI SI+ISHKLNEI +VAD +T+LRDG+ + TLD EV ED II+ MV R Sbjct: 203 LLREFRAQGITSILISHKLNEIREVADKITVLRDGKAVATLDCHAGEVEEDDIIRKMVDR 262 Query: 245 DLTNRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMGAGRT 304 DL +RYP+R P +G IFE+ +W VYHP DR + N++ +R GE+VGIAGLMGAGRT Sbjct: 263 DLESRYPKRDPKIGNVIFEVDNWSVYHPLHPDRHSVKNVSFKVRAGEIVGIAGLMGAGRT 322 Query: 305 ELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLILIDDXXXX 364 E AMS+FG+S+G I+G+ ++G V ++ + +AI +GLAYVTEDRK GL+L + Sbjct: 323 EFAMSLFGRSWGTNITGEARINGKTVDISTVARAIKAGLAYVTEDRKKLGLVLGQNISRN 382 Query: 365 XXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLSKWIY 424 G+I++ E+ +A YR ++ I+ ++ Q+T LSGGNQQKVVLSKW++ Sbjct: 383 ISLAHLRGVSPKGIIDDIREMKIANSYRDQMRIRCHNVYQETGTLSGGNQQKVVLSKWLF 442 Query: 425 AQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYTMCEG 484 PD+LILDEPTRGIDVGAKY+IY+IIN LA GKGV+VISSE+PE+IG+CDRI M EG Sbjct: 443 TGPDVLILDEPTRGIDVGAKYDIYTIINSLAESGKGVVVISSEMPELIGICDRIVVMHEG 502 Query: 485 RISGEVERQDASQELLMKYMTRSRG 509 GEV ++A+QE +M+ + R+ G Sbjct: 503 AFVGEVAGEEATQENIMRAIMRNTG 527 >ECs4450 [G] COG1129 ABC-type sugar transport system, ATPase component Length = 513 Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust. Identities = 235/504 (46%), Positives = 338/504 (67%), Gaps = 4/504 (0%) Query: 5 ILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTYEGDI 64 +LEMK ITKTF VKA+ +V+L++ AGEI +LCGENG+GKSTLMKVL G+YPHG+YEG+I Sbjct: 4 LLEMKNITKTFGSVKAIDNVSLRLNAGEIVSLCGENGSGKSTLMKVLCGIYPHGSYEGEI 63 Query: 65 LFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNETTVKT 124 +F G+ Q I+D+E GI IIHQELAL+ L++ ENIFLGNE +G+++++ T++ Sbjct: 64 IFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENIFLGNEITHNGIMDYDLMTLRC 123 Query: 125 KELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSENLLR 184 ++LL V LS SP T+V +G+G+QQLVEIAKAL+K+V+LLILDEPTA+L E ++ LL Sbjct: 124 QKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASLTEQETSVLLD 183 Query: 185 LILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKGMVGR 244 +I +L+Q GIA I ISHKLNE++ ++D++ ++RDGQ I T D ++ED II MVGR Sbjct: 184 IIRDLQQHGIACIYISHKLNEVKAISDTICVIRDGQHIGTRDAAG--MSEDDIITMMVGR 241 Query: 245 DLTNRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMGAGRT 304 +LT YP G+ I I +HP K +++++ ++RGE++GIAGL+GAGRT Sbjct: 242 ELTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKRVNDVSFSLKRGEILGIAGLVGAGRT 301 Query: 305 ELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLI-LIDDXXX 363 E +FG G+ G++Y+ G +V + + +AI G+A V EDRK G++ ++ Sbjct: 302 ETIQCLFGVWPGQW-EGKIYIDGKQVDIRNCQQAIAQGIAMVPEDRKRDGIVPVMAVGKN 360 Query: 364 XXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLSKWI 423 +++ E E ++L +KT S LSGGNQQK +L++ + Sbjct: 361 ITLAALNKFTGGISQLDDAAEQKCILESIQQLKVKTSSPDLAIGRLSGGNQQKAILARCL 420 Query: 424 YAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYTMCE 483 P ILILDEPTRGID+GAKYEIY +IN L +G V+VISSELPE++G+ DR+ M E Sbjct: 421 LLNPRILILDEPTRGIDIGAKYEIYKLINQLVQQGIAVIVISSELPEVLGLSDRVLVMHE 480 Query: 484 GRISGEVERQDASQELLMKYMTRS 507 G++ + + +QE +M+ RS Sbjct: 481 GKLKANLINHNLTQEQVMEAALRS 504 >xylG [G] COG1129 ABC-type sugar transport system, ATPase component Length = 513 Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust. Identities = 235/504 (46%), Positives = 337/504 (66%), Gaps = 4/504 (0%) Query: 5 ILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTYEGDI 64 +LEMK ITKTF VKA+ +V L++ AGEI +LCGENG+GKSTLMKVL G+YPHG+YEG+I Sbjct: 4 LLEMKNITKTFGSVKAIDNVCLRLNAGEIVSLCGENGSGKSTLMKVLCGIYPHGSYEGEI 63 Query: 65 LFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNETTVKT 124 +F G+ Q I+D+E GI IIHQELAL+ L++ ENIFLGNE +G+++++ T++ Sbjct: 64 IFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENIFLGNEITHNGIMDYDLMTLRC 123 Query: 125 KELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSENLLR 184 ++LL V LS SP T+V +G+G+QQLVEIAKAL+K+V+LLILDEPTA+L E ++ LL Sbjct: 124 QKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASLTEQETSILLD 183 Query: 185 LILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKGMVGR 244 +I +L+Q GIA I ISHKLNE++ ++D++ ++RDGQ I T D ++ED II MVGR Sbjct: 184 IIRDLQQHGIACIYISHKLNEVKAISDTICVIRDGQHIGTRDAAG--MSEDDIITMMVGR 241 Query: 245 DLTNRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMGAGRT 304 +LT YP G+ I I +HP K +++++ ++RGE++GIAGL+GAGRT Sbjct: 242 ELTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKRVNDVSFSLKRGEILGIAGLVGAGRT 301 Query: 305 ELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLI-LIDDXXX 363 E +FG G+ G++Y+ G +V + + +AI G+A V EDRK G++ ++ Sbjct: 302 ETIQCLFGVWPGQW-EGKIYIDGKQVDIRNCQQAIAQGIAMVPEDRKRDGIVPVMAVGKN 360 Query: 364 XXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLSKWI 423 +++ E E ++L +KT S LSGGNQQK +L++ + Sbjct: 361 ITLAALNKFTGGISQLDDAAEQKCILESIQQLKVKTSSPDLAIGRLSGGNQQKAILARCL 420 Query: 424 YAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYTMCE 483 P ILILDEPTRGID+GAKYEIY +IN L +G V+VISSELPE++G+ DR+ M E Sbjct: 421 LLNPRILILDEPTRGIDIGAKYEIYKLINQLVQQGIAVIVISSELPEVLGLSDRVLVMHE 480 Query: 484 GRISGEVERQDASQELLMKYMTRS 507 G++ + + +QE +M+ RS Sbjct: 481 GKLKANLINHNLTQEQVMEAALRS 504 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 36,592,598 Number of extensions: 1538205 Number of successful extensions: 26714 Number of sequences better than 1.0e-05: 2021 Number of HSP's gapped: 23428 Number of HSP's successfully gapped: 2811 Length of query: 509 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 398 Effective length of database: 25,576,357 Effective search space: 10179390086 Effective search space used: 10179390086 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 118 (50.1 bits)