BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0487.0001.p (365 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc4267 [G] COG4213 ABC-type xylose transport system, periplasmi... 476 e-134 SMb20895 [G] COG4213 ABC-type xylose transport system, periplasm... 447 e-125 mll5659 [G] COG4213 ABC-type xylose transport system, periplasmi... 371 e-102 BMEII0360 [G] COG4213 ABC-type xylose transport system, periplas... 317 1e-86 BMEII0146 [G] COG4213 ABC-type xylose transport system, periplas... 163 3e-40 >AGc4267 [G] COG4213 ABC-type xylose transport system, periplasmic component Length = 248 Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust. Identities = 0/350 (0%), Positives = 0/350 (0%) Query: 14 LVLILSACXXXXXXXXXXXXXXXXXKVGIAMPTKSSERWVNDGNNMVKEFEKLGYGTDLQ 73 + + + K + + K + D + Sbjct: 4 MTIKNAMVLAAGLGTRMRPITDTIPKPLVKIAGKPMIDYALDALVEAGAETIVVNVHHHA 63 Query: 74 YAEDVVENQVSQIENMITKGVKAIVIASIDGEALTDVLQKAHDADVKVIAYDRLIKKSEY 133 + E +I+ ++ + +L+ + + + + Sbjct: 64 EQMISHLGHRTDAEILISDERTQLMNSGGGLAKGLKLLKPGPVFVMNADLFWIGERLNAV 123 Query: 134 VDYYATFDNFKVGVLQGSYIEEKLGLKEGKGPFNIELFGGSPDDNNAYFFFDGAMSILKP 193 + + + + + G G + Sbjct: 124 SNLRKLAQFLDPARMDMALLCVDMDRTTGHNGKRDFNLAGEGKLTRYRDGDANPVVYAGA 183 Query: 194 YIDSGKLVVRSKQTTMDQVATLRWDGAAAQARMDNLLSANYASDNLDAVLSPYDGISIGI 253 +L+ + + + +L DA+ I Sbjct: 184 IAMDSRLLDDAPADAFNLNIYFDRAIEKDRLFGLSLDGHWITVGTPDAIDDAESIIRQFR 243 Query: 254 LSSLKGVGYGAGDKKLPVVTGQDAELASIKSILAGEQTQTVFKDTRQLAKKAVEMTESVL 313 Sbjct: 244 303 Query: 314 KGTEAEVNDTTTYDNGVKIVPSYLLEPVSVDAGNVDKVLVDGGYYTKEQL 363 Sbjct: 304 353 >SMb20895 [G] COG4213 ABC-type xylose transport system, periplasmic component Length = 355 Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/324 (66%), Positives = 260/324 (80%) Query: 40 VGIAMPTKSSERWVNDGNNMVKEFEKLGYGTDLQYAEDVVENQVSQIENMITKGVKAIVI 99 VGI+MPTK+S RW++DG M K F++ GY DLQ+A+D + NQ++QIENM+TKG K +VI Sbjct: 30 VGISMPTKTSTRWISDGETMEKLFKEAGYTPDLQFADDDIPNQLAQIENMVTKGAKVLVI 89 Query: 100 ASIDGEALTDVLQKAHDADVKVIAYDRLIKKSEYVDYYATFDNFKVGVLQGSYIEEKLGL 159 +IDG L+D+LQKA DA VKVIAYDRLI+ S VDYYATFDNF+VGVLQ + + E L L Sbjct: 90 GAIDGTTLSDILQKAADAGVKVIAYDRLIRDSGNVDYYATFDNFQVGVLQATSLVEGLKL 149 Query: 160 KEGKGPFNIELFGGSPDDNNAYFFFDGAMSILKPYIDSGKLVVRSKQTTMDQVATLRWDG 219 P N+ELFGGSPDDNNA+FF+DGAMS+L+P IDSGK+VV+S Q MDQV TLRWDG Sbjct: 150 DSATEPKNVELFGGSPDDNNAFFFYDGAMSVLQPLIDSGKIVVKSGQMGMDQVGTLRWDG 209 Query: 220 AAAQARMDNLLSANYASDNLDAVLSPYDGISIGILSSLKGVGYGAGDKKLPVVTGQDAEL 279 A AQARM+NLLS+ Y +D VLSPYDG+SIGI+S+LKGVGYG+GD +P+VTGQDAEL Sbjct: 210 AVAQARMENLLSSAYTDAKVDGVLSPYDGLSIGIISALKGVGYGSGDMPMPIVTGQDAEL 269 Query: 280 ASIKSILAGEQTQTVFKDTRQLAKKAVEMTESVLKGTEAEVNDTTTYDNGVKIVPSYLLE 339 S+KSILAGEQ TVFKDTR+LAK V M +++ G E EVNDT TY+NGVK+VPSYLL+ Sbjct: 270 PSVKSILAGEQYSTVFKDTRELAKVTVNMVNAIMDGKEPEVNDTKTYENGVKVVPSYLLK 329 Query: 340 PVSVDAGNVDKVLVDGGYYTKEQL 363 PVSVD N VLV GYYT++QL Sbjct: 330 PVSVDKSNAKDVLVGSGYYTEDQL 353 >mll5659 [G] COG4213 ABC-type xylose transport system, periplasmic component Length = 356 Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/328 (58%), Positives = 243/328 (74%), Gaps = 6/328 (1%) Query: 40 VGIAMPTKSSERWVNDGNNMVKEFEKLGYGTDLQYAEDVVENQVSQIENMITKGVKAIVI 99 VG+ MPTK+S+RW+NDG+ + + E LGY DLQYA+D + NQ+SQ+EN ITKG KA++I Sbjct: 30 VGVLMPTKTSQRWINDGDAVKSQLEALGYTVDLQYAQDDIPNQLSQLENEITKGPKALII 89 Query: 100 ASIDGEALTDVLQKAHDADVKVIAYDRLIKKSEYVDYYATFDNFKVGVLQGSYIEEKLGL 159 ASIDG L+D LQKA DA V V+AYDRLIKK+ VDYY TFDNF VGV+Q + + + GL Sbjct: 90 ASIDGTTLSDALQKAADAGVVVVAYDRLIKKTANVDYYTTFDNFGVGVIQANSLVK--GL 147 Query: 160 KE---GKGPFNIELFGGSPDDNNAYFFFDGAMSILKPYIDSGKLVVRSKQTTMDQVATLR 216 KE P+N+ELFGGSPDDNNA+FF++GA+S+L+P ID G + ++S Q MD+V TLR Sbjct: 148 KERFPNTKPWNVELFGGSPDDNNAFFFYNGAISVLQPLIDDGSIKIKSGQMGMDKVGTLR 207 Query: 217 WDGAAAQARMDNLLSANYA-SDNLDAVLSPYDGISIGILSSLKGVGYGAGDKKLPVVTGQ 275 W A AQARMDNLLSANY+ +D VLSPYDG+S GI +SL+ VGYG + PVVTGQ Sbjct: 208 WLAATAQARMDNLLSANYSDGSRVDGVLSPYDGLSRGITASLRAVGYGTAAQPWPVVTGQ 267 Query: 276 DAELASIKSILAGEQTQTVFKDTRQLAKKAVEMTESVLKGTEAEVNDTTTYDNGVKIVPS 335 DAE AS+K I++GEQ TVFKDTR+LAK VE+ + VL G + + DT TY+N VK+VPS Sbjct: 268 DAETASVKLIISGEQYSTVFKDTRELAKSTVELVDKVLSGGKPDGLDTKTYNNDVKVVPS 327 Query: 336 YLLEPVSVDAGNVDKVLVDGGYYTKEQL 363 LL P VD N K++VD GY E L Sbjct: 328 ILLTPHEVDKSNYQKLVVDSGYIKAEDL 355 >BMEII0360 [G] COG4213 ABC-type xylose transport system, periplasmic component Length = 218 Score = 317 bits (813), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 153/217 (70%), Positives = 182/217 (83%) Query: 147 VLQGSYIEEKLGLKEGKGPFNIELFGGSPDDNNAYFFFDGAMSILKPYIDSGKLVVRSKQ 206 +LQ IE+ L LK GPFNIELFGGSPDDNNAYFF++GAMS+L+PYIDSGKLVV S Q Sbjct: 1 MLQAQSIEKALDLKNKPGPFNIELFGGSPDDNNAYFFYNGAMSVLQPYIDSGKLVVGSGQ 60 Query: 207 TTMDQVATLRWDGAAAQARMDNLLSANYASDNLDAVLSPYDGISIGILSSLKGVGYGAGD 266 T MD+VATLRWDGA AQARMD++LSA Y+ LDAVLSPYDGISIGILSSLKGVGYG+GD Sbjct: 61 TGMDKVATLRWDGATAQARMDSILSAYYSDKKLDAVLSPYDGISIGILSSLKGVGYGSGD 120 Query: 267 KKLPVVTGQDAELASIKSILAGEQTQTVFKDTRQLAKKAVEMTESVLKGTEAEVNDTTTY 326 +PVV+GQDAE+ S+KSILAGEQ T+FKDTR+LAK V+M ++++ G E EVNDT TY Sbjct: 121 MPMPVVSGQDAEIPSVKSILAGEQNSTIFKDTRELAKVTVDMVDALMTGKEPEVNDTKTY 180 Query: 327 DNGVKIVPSYLLEPVSVDAGNVDKVLVDGGYYTKEQL 363 +NGVK+VPSYLL+PV VD N +VLVD GYY ++Q+ Sbjct: 181 NNGVKVVPSYLLKPVIVDKSNWKQVLVDSGYYKEDQI 217 >BMEII0146 [G] COG4213 ABC-type xylose transport system, periplasmic component Length = 319 Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 110/324 (33%), Positives = 177/324 (54%), Gaps = 22/324 (6%) Query: 40 VGIAMPTKSSERWVNDGNNMVKEFEKLGYGTDLQYAEDVVENQVSQIENMITKGVKAIVI 99 +G ++ ERW D + + EKLG ++Q A+ E QV Q+EN+I++GV AIVI Sbjct: 15 IGFSIDDLRVERWARDRDYFIAAAEKLGAKVNVQSADGNEEKQVKQVENLISQGVDAIVI 74 Query: 100 ASIDGEALTDVLQKAHDADVKVIAYDRLIKKSEYVDYYATFDNFKVGVLQGSYIEEKLGL 159 ++ + V+ A + +KV++YDRLI ++ +D Y +FDN +VG +Q + L Sbjct: 75 VPMNSKVFDAVVADAKASGIKVLSYDRLILNAD-IDAYISFDNERVGFMQAQAV-----L 128 Query: 160 KEGKGPFNIELFGGSPDDNNAYFFFDGAMSILKPYIDSGKLVVRSKQTTMDQVATLRWDG 219 K K N L GGSP DNNA G LK +DSGK+ + Q + W Sbjct: 129 K-AKPEGNYYLLGGSPTDNNAKLLRAGQEKALKEAMDSGKVKIVGSQWVKE------WSP 181 Query: 220 AAAQARMDNLLSANYASDNLDAVLSPYDGISIGILSSLKGVGYGAGDKKLPVVTGQDAEL 279 A + M+N L+A + +DAV++ DG + G + +L G V+GQD++L Sbjct: 182 TEALSIMENALTAT--QNKIDAVVASNDGTAGGAIQALAAQGLAGK----TAVSGQDSDL 235 Query: 280 ASIKSILAGEQTQTVFKDTRQLAKKAVEMTESVLKGTEAEVNDTTTYDNGVKIVPSYLLE 339 A++K ++ G QT TV+K + +A++A ++T +++ + E N +NG K V + LL Sbjct: 236 AAVKRLVDGTQTVTVYKPLKLIAEEAAKLTVQMVRDEKPEFN--GKINNGSKDVDTLLLT 293 Query: 340 PVSVDAGNVDKVLVDGGYYTKEQL 363 P +V N+D + + G+YTKEQ+ Sbjct: 294 PTAVTKDNID-IYIKDGFYTKEQI 316 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 25,570,905 Number of extensions: 1072754 Number of successful extensions: 1831 Number of sequences better than 1.0e-05: 37 Number of HSP's gapped: 1803 Number of HSP's successfully gapped: 37 Length of query: 365 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 257 Effective length of database: 25,922,359 Effective search space: 6662046263 Effective search space used: 6662046263 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 116 (49.3 bits)