BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0486.0011.p (359 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC1325 [G] COG1879 ABC-type sugar transport system, periplasmic ... 271 8e-73 YPO1507 [G] COG1879 ABC-type sugar transport system, periplasmic... 269 4e-72 TP0545 [G] COG1879 ABC-type sugar transport system, periplasmic ... 266 3e-71 STM2190 [G] COG1879 ABC-type sugar transport system, periplasmic... 260 2e-69 ZmglB [G] COG1879 ABC-type sugar transport system, periplasmic c... 260 2e-69 >VC1325 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 324 Score = 271 bits (694), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 152/305 (49%), Positives = 193/305 (63%), Gaps = 10/305 (3%) Query: 54 VGVAIYKFDDTFMTGVRNAIDTAAKGIATVDIV--DSQNSQPTQNDKVDLFITKKYDGML 111 +G IYK+DD FM+ VR AI+ A + I+ DSQNSQ QND+VD+ + + + Sbjct: 26 IGFTIYKYDDNFMSVVRQAIEKEAAADSNTRILMNDSQNSQSMQNDQVDVMLARGVQALA 85 Query: 112 INPVDRTAAGVIIDKAKTADIPVVFLNREPLPEDMKKWDKVYYVGAKAEESGTMSGQLIV 171 IN VD AA II KAK D+PVVF N+EP E M +DK +YVG ++ESG + G LI Sbjct: 86 INLVDPAAAPTIIQKAKIDDVPVVFYNKEPSAEAMASYDKAFYVGTDSKESGIIQGDLIS 145 Query: 172 DYWKAHPEADKNKDGVLQYVMLKGEPGHQDAELRTTYSIQAIEDAGIKVEKLAEDTAMWD 231 WKA+P DKN DGVLQYVMLKGEPGH DAE RTTYS+Q I D GIK ++L DT MWD Sbjct: 146 AQWKANPAWDKNGDGVLQYVMLKGEPGHPDAEARTTYSVQTINDNGIKTQELHMDTGMWD 205 Query: 232 RVKGQEKMAAFL-GSHGDKIEAVLANNDDMALGAIEALKAAGYFTGDKYMPVVGVDATAP 290 ++KM A+L G +G KIE V+ANND MA+GAIEAL+ AG + +PV GVDA A Sbjct: 206 TAMAKDKMDAWLSGPNGSKIEVVIANNDGMAMGAIEALRGAG-----QKIPVFGVDALAE 260 Query: 291 AVQALQDGTMLGTVLNDANNQGKXXXXXXXXXXKGEAPTKENVGFDITDNQYVWISYKKI 350 A+ ++ G M GTVLNDA NQ K G+ P E + I +N+ V + Y + Sbjct: 261 ALALIKSGDMAGTVLNDAQNQAKATFELARNLANGK-PAAEGTQWTI-ENKVVRVPYVGV 318 Query: 351 TKDNV 355 +NV Sbjct: 319 DINNV 323 >YPO1507 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 335 Score = 269 bits (688), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 144/308 (46%), Positives = 202/308 (65%), Gaps = 9/308 (2%) Query: 53 KVGVAIYKFDDTFMTGVRNAIDTAAKGIATVDIV--DSQNSQPTQNDKVDLFITKKYDGM 110 ++GV IYK+DD FM+ VR AI+ AK + ++ DSQN Q QND++D+ + K + Sbjct: 31 RIGVTIYKYDDNFMSVVRKAIEKDAKASPEITLLMNDSQNDQSKQNDQIDVLLAKGVKAL 90 Query: 111 LINPVDRTAAGVIIDKAKTADIPVVFLNREPLPEDMKKWDKVYYVGAKAEESGTMSGQLI 170 IN VD AA V+IDKA++ DIP+VF N+EP + + +DK YYVG ++ESG + G+LI Sbjct: 91 AINLVDPAAAPVVIDKARSNDIPIVFYNKEPSRKALDSYDKAYYVGTDSKESGVIQGELI 150 Query: 171 VDYWKAHPEADKNKDGVLQYVMLKGEPGHQDAELRTTYSIQAIEDAGIKVEKLAEDTAMW 230 +W+A+PE D NKDG +Q+V+LKGEPGH DAE RTTY I+ + + G+ ++L DTAMW Sbjct: 151 AKHWQANPEWDLNKDGKIQFVLLKGEPGHPDAEARTTYVIKTLNEKGLPTQQLQLDTAMW 210 Query: 231 DRVKGQEKMAAFL-GSHGDKIEAVLANNDDMALGAIEALKAAGYFTGDKYMPVVGVDATA 289 D + ++KM A+L G + +KIE V+ANND MA+GA+EALKA + +PV GVDA Sbjct: 211 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKTS----VPVFGVDALP 266 Query: 290 PAVQALQDGTMLGTVLNDANNQGKXXXXXXXXXXKGEAPTKENVGFDITDNQYVWISYKK 349 A+ ++ G M GTVLNDANNQ K G+ P E + I +N+ V I Y Sbjct: 267 EALALVKSGQMAGTVLNDANNQAKATFDLAKNLAAGK-PAAEGTTWKI-ENKIVRIPYVG 324 Query: 350 ITKDNVAD 357 + KDN+A+ Sbjct: 325 VDKDNLAE 332 >TP0545 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 354 Score = 266 bits (681), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 136/322 (42%), Positives = 192/322 (59%), Gaps = 17/322 (5%) Query: 50 ETPKVGVAIYKFDDTFMTGVRNAIDTAAKGIATVDIVDSQNSQPTQNDKVDLFITKKYDG 109 E P +GV +Y++D+T + +R+ + T K A + IVDSQ SQ QN +D FI + G Sbjct: 24 EKPTIGVVVYQYDNTLVARLRHILSTVGKKHARILIVDSQASQSIQNKHIDQFIARGVHG 83 Query: 110 MLINPVDRTAAGVIIDKAKTADIPVVFLNREPLPEDMKKWDKVYYVGAKAEESGTMSGQL 169 + +N VD AA +I+KA+ A IP+VF NR P D+ ++ + YYVG K +E G + +L Sbjct: 84 LAVNLVDHRAARTVIEKAQQARIPLVFFNRMPDLSDLNRYARAYYVGVKDDELGLLQSRL 143 Query: 170 IVDYWKAHPEADKNKDGVLQYVMLKGEPGHQDAELRTTYSIQAIEDAGIKVEKLAEDTAM 229 + Y + P ADKN DG++Q V+LKG+P H+ Y QA+ + G+K E + E A+ Sbjct: 144 VAQYLERTPSADKNADGIIQCVVLKGDPDHKSGARCARYVCQALREIGLKGEIIGEAFAL 203 Query: 230 WDRVKGQEKMAAFLGSHGDKIEAVLANNDDMALGAIEALKAAGYFTGDKYMPVVGVDATA 289 RVKGQ M + +HGD+IEAV ANNDD ALGAIEAL++AG+F +K +PVVG+DATA Sbjct: 204 DSRVKGQAAMHTLIHTHGDRIEAVFANNDDAALGAIEALQSAGFFKENKRVPVVGIDATA 263 Query: 290 PAVQALQDGTMLGTVLNDANNQGKXXXXXXXXXXKGEAP----------TKENVG----- 334 A++A+++ MLGTVLND ++QGK P T G Sbjct: 264 SALKAIEEDLMLGTVLNDVSSQGKAILNLLFALMGDSVPSIPAEDSTAFTHAGNGVAGRA 323 Query: 335 --FDITDNQYVWISYKKITKDN 354 F + Q VWI YK +TK+N Sbjct: 324 AVFGTAEKQCVWIPYKVVTKEN 345 >STM2190 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 332 Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/308 (45%), Positives = 199/308 (64%), Gaps = 9/308 (2%) Query: 53 KVGVAIYKFDDTFMTGVRNAIDTAAKGIATVDIV--DSQNSQPTQNDKVDLFITKKYDGM 110 ++GV IYK+DD FM+ VR AI+ K V ++ DSQN Q QND++D+ + K + Sbjct: 27 RIGVTIYKYDDNFMSVVRKAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 Query: 111 LINPVDRTAAGVIIDKAKTADIPVVFLNREPLPEDMKKWDKVYYVGAKAEESGTMSGQLI 170 IN VD AAG +I+KA+ ++PVVF N+EP + + +DK YYVG ++ESG + G LI Sbjct: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGVIQGDLI 146 Query: 171 VDYWKAHPEADKNKDGVLQYVMLKGEPGHQDAELRTTYSIQAIEDAGIKVEKLAEDTAMW 230 +W+A+ D NKDG +QYV+LKGEPGH DAE RTTY ++ + D GI+ E+LA DTAMW Sbjct: 147 AKHWQANQGWDLNKDGKIQYVLLKGEPGHPDAEARTTYVVKELNDKGIQTEQLALDTAMW 206 Query: 231 DRVKGQEKMAAFL-GSHGDKIEAVLANNDDMALGAIEALKAAGYFTGDKYMPVVGVDATA 289 D + ++KM A+L G + +KIE V+ANND MA+GA+EALKA + +PV GVDA Sbjct: 207 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS----IPVFGVDALP 262 Query: 290 PAVQALQDGTMLGTVLNDANNQGKXXXXXXXXXXKGEAPTKENVGFDITDNQYVWISYKK 349 A+ ++ G M GTVLNDANNQ K +G+ + + I +N+ V + Y Sbjct: 263 EALALVKSGAMAGTVLNDANNQAKATFDLAKNLAEGKGAA-DGTSWKI-ENKIVRVPYVG 320 Query: 350 ITKDNVAD 357 + KDN+++ Sbjct: 321 VDKDNLSE 328 >ZmglB [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 332 Score = 260 bits (664), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 142/308 (46%), Positives = 197/308 (63%), Gaps = 9/308 (2%) Query: 53 KVGVAIYKFDDTFMTGVRNAIDTAAKGIATVDIV--DSQNSQPTQNDKVDLFITKKYDGM 110 ++GV IYK+DD FM+ VR AI+ AK V ++ DSQN Q QND++D+ + K + Sbjct: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 Query: 111 LINPVDRTAAGVIIDKAKTADIPVVFLNREPLPEDMKKWDKVYYVGAKAEESGTMSGQLI 170 IN VD AAG +I+KA+ ++PVVF N+EP + + +DK YYVG ++ESG + G LI Sbjct: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 Query: 171 VDYWKAHPEADKNKDGVLQYVMLKGEPGHQDAELRTTYSIQAIEDAGIKVEKLAEDTAMW 230 +W A+ D NKDG +Q+V+LKGEPGH DAE RTTY I+ + D GIK E+L DTAMW Sbjct: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW 206 Query: 231 DRVKGQEKMAAFL-GSHGDKIEAVLANNDDMALGAIEALKAAGYFTGDKYMPVVGVDATA 289 D + ++KM A+L G + +KIE V+ANND MA+GA+EALKA + +PV GVDA Sbjct: 207 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS----IPVFGVDALP 262 Query: 290 PAVQALQDGTMLGTVLNDANNQGKXXXXXXXXXXKGEAPTKENVGFDITDNQYVWISYKK 349 A+ ++ G + GTVLNDANNQ K G+ + + I DN+ V + Y Sbjct: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA-DGTNWKI-DNKVVRVPYVG 320 Query: 350 ITKDNVAD 357 + KDN+A+ Sbjct: 321 VDKDNLAE 328 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,378,611 Number of extensions: 958761 Number of successful extensions: 1671 Number of sequences better than 1.0e-05: 49 Number of HSP's gapped: 1591 Number of HSP's successfully gapped: 49 Length of query: 359 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 251 Effective length of database: 25,922,359 Effective search space: 6506512109 Effective search space used: 6506512109 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 116 (49.3 bits)