BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0486.0002.p
         (538 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ypbR_3 [R] COG0699 Predicted GTPases (dynamin-related)             167   6e-41
all3927 [R] COG0699 Predicted GTPases (dynamin-related)                55   3e-07

>BS_ypbR_3 [R] COG0699 Predicted GTPases (dynamin-related)
          Length = 350

 Score =  167 bits (422), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 105/147 (71%)

Query: 70  TVDLQEYRTLVAEETRACFIQGIDLYYDCPLTASGIVLVDTPGADSLHARHTGVTFGYMK 129
           T+ L E +  VAEET AC ++ + +YY CPLT  GI +VDTPGA S++ RHT + F Y+K
Sbjct: 185 TIPLSELKPYVAEETTACAVKEVTVYYTCPLTEKGITIVDTPGASSMNKRHTELAFQYIK 244

Query: 130 NADAICFVTYYNHAFSKADRGLLAQLGRIKDSFALDKMFFIINASDLASDEDELQEVQQH 189
           +ADA  ++TYY H+FSK DR  L +LG +K+S ++DKMFFIINA+DLA D+ EL+ V  +
Sbjct: 245 DADAFFYMTYYQHSFSKGDRSFLRKLGLVKESLSMDKMFFIINAADLAKDKTELETVTDY 304

Query: 190 VAQNLRAGGLMKPQMYSLSSLLALEGK 216
           V+  L   G+ +PQ++++SS   L GK
Sbjct: 305 VSAELVKEGVYEPQLFTVSSKEELVGK 331


>all3927 [R] COG0699 Predicted GTPases (dynamin-related)
          Length = 863

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 107/223 (47%), Gaps = 23/223 (10%)

Query: 97  DCPLTASGIVLVDTPGADSLHARHTGVTFGYMKNADAICFVTYYNHAFSKADRGLLAQLG 156
           +  L  SG+ ++D+PG +  +   T +T   +++ DA  FVT  + + ++ +R  L +L 
Sbjct: 362 NLALCNSGVEIIDSPGLNE-NPELTAITQNLLQDIDAAIFVTNASRSLTQGERQSLNEL- 419

Query: 157 RIK-----DSFALDKMFFIINASDLASDEDELQEVQQHVAQNLRAGGLM---KPQMYSLS 208
           R+K     D    + +F ++N  DL + E    ++++ +   +     +   K +++ +S
Sbjct: 420 RLKLNGGKDQEPANNLFIVVNFMDLVNTEKSRDQIKKRIYNFVEGEKPIITGKNRVHFIS 479

Query: 209 SLLALEGKTAGSRELYEASRFSSFEQALADFAGGELPRLSLAAAKDSLSTVRRRTEEWQE 268
           +  AL     G  + Y+ S F +F +++  F   E  RL L    D L+ + +R      
Sbjct: 480 AQAALRSVMYGYEDEYKKS-FDTFIKSIERFLILERGRLKLQPLPDQLNKIIQRI----- 533

Query: 269 KARQAAGQREAQMRELEDQCRIAEQRLRQLAGE--ERPGRDLR 309
                   RE +  ELE + +IAE+  R++  +  E  GRD++
Sbjct: 534 ----INNLREFK-DELESKIKIAEEGKRKILEQIGEFSGRDVK 571


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 35,881,281
Number of extensions: 1375119
Number of successful extensions: 3372
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3374
Number of HSP's successfully gapped: 2
Length of query: 538
Length of database: 38,378,431
Length adjustment: 111
Effective length of query: 427
Effective length of database: 25,576,357
Effective search space: 10921104439
Effective search space used: 10921104439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 118 (50.1 bits)