BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0483.0001.p
         (112 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SA0992 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins         88   3e-18
DR0944 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins         88   4e-18
BS_trxA [OC] COG0526 Thiol-disulfide isomerase and thioredoxins        86   1e-17
CAC3083 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins        83   8e-17
AF1284 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins         80   5e-16

>SA0992 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins
          Length = 104

 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 2/104 (1%)

Query: 2   MAVINTEHADTLRLRLREGGTVLVDYGAPWCPPCQTLLPILEELDEEYGSNVTILKVNCD 61
           MA++    AD    ++ E G  LVD+ A WC PC+ + P+LEEL  +Y     ILK++ D
Sbjct: 1   MAIVKVTDAD-FDSKV-ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVD 58

Query: 62  VLPELAAEAGVMGLPTVVVYNGGQPMEKLVGLRPKSAYQGVLDR 105
             P  AA+  VM +PT++V+  GQP++K+VG +PK     VLD+
Sbjct: 59  ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 102


>DR0944 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins
          Length = 141

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 57/85 (67%)

Query: 21  GTVLVDYGAPWCPPCQTLLPILEELDEEYGSNVTILKVNCDVLPELAAEAGVMGLPTVVV 80
           G  LVD+ APWC PC+ + P++EEL  +Y   V + KVN D  P  + +  VM +PT+++
Sbjct: 50  GLTLVDFWAPWCGPCRIIAPVIEELAGQYEGRVKVAKVNVDDNPATSGQFRVMSIPTMIL 109

Query: 81  YNGGQPMEKLVGLRPKSAYQGVLDR 105
           +  GQP+E +VG +PK A++ VLD+
Sbjct: 110 FKDGQPVEGMVGAQPKRAFESVLDK 134


>BS_trxA [OC] COG0526 Thiol-disulfide isomerase and thioredoxins
          Length = 127

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 4/85 (4%), Positives = 14/85 (16%)

Query: 21  GTVLVDYGAPWCPPCQTLLPILEELDEEYGSNVTILKVNCDVLPELAAEAGVMGLPTVVV 80
                            +L     +  ++ +           + +  A+     L    +
Sbjct: 18  YMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKL 77

Query: 81  YNGGQPMEKLVGLRPKSAYQGVLDR 105
                P               +   
Sbjct: 78  NIDQNPGTAPKYGIRGIPTLLLFKN 102


>CAC3083 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins
          Length = 105

 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 54/86 (62%)

Query: 20  GGTVLVDYGAPWCPPCQTLLPILEELDEEYGSNVTILKVNCDVLPELAAEAGVMGLPTVV 79
           G  V+VD+ APWC PC+ L PI++EL E+        KVN D  P +A++ G+  +PTV+
Sbjct: 18  GEPVIVDFWAPWCGPCKMLGPIIDELSEDLDGKAKFTKVNVDENPGIASKFGIASIPTVM 77

Query: 80  VYNGGQPMEKLVGLRPKSAYQGVLDR 105
           ++  G P+E LVG RPK +    +++
Sbjct: 78  IFKDGNPVETLVGFRPKQSITASIEK 103


>AF1284 [OC] COG0526 Thiol-disulfide isomerase and thioredoxins
          Length = 134

 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 55/89 (61%)

Query: 17  LREGGTVLVDYGAPWCPPCQTLLPILEELDEEYGSNVTILKVNCDVLPELAAEAGVMGLP 76
           L+    V+VD+ A WC PC+ + P++EEL +EY   V   K+N D  P +AA  G+  +P
Sbjct: 44  LKNNENVVVDFWAEWCMPCKMIAPVIEELAKEYAGKVVFGKLNTDENPTIAARYGISAIP 103

Query: 77  TVVVYNGGQPMEKLVGLRPKSAYQGVLDR 105
           T++ +  G+P+++LVG  PKS  +  + R
Sbjct: 104 TLIFFKKGKPVDQLVGAMPKSELKRWVQR 132


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,839,540
Number of extensions: 357590
Number of successful extensions: 1882
Number of sequences better than 1.0e-05: 106
Number of HSP's gapped: 1885
Number of HSP's successfully gapped: 106
Length of query: 112
Length of database: 38,378,431
Length adjustment: 79
Effective length of query: 33
Effective length of database: 29,267,045
Effective search space: 965812485
Effective search space used: 965812485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)