BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0020.p (318 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ZylbB [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopi... 247 2e-65 ECs0578 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamino... 247 2e-65 BS_ylbB [R] COG0517 FOG: CBS domain 246 2e-65 ylbB [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopim... 246 2e-65 ZylbB [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopi... 246 2e-65 >ZylbB [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 247 bits (630), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 0/316 (0%), Positives = 0/316 (0%), Gaps = 12/316 (3%) Query: 1 LAETFGPPLRTLEVVAFCEEEGSRFPLAFWGSGNVTGLYNGWVADSIADPEGVTLMEAMN 60 AE V A A Sbjct: 107 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARR 166 Query: 61 ACGLGTGGSRIDSEESSGRGADSARREDIGMYVELHIEQGILLEQSAEQIGVVQAIAGQR 120 G Sbjct: 167 WKPEILDGFTK------------ 214 Query: 121 RFTVKVTGTANHAGTTPMGLRRDALAGTAEMLCALERSAAKAGAPLVATAGRLEVIPGTP 180 Sbjct: 215 274 Query: 181 NVIPGEVQFTLDIRHSEXXXXXXXXXXXXXXXXXXXXXXXLALELVPTLATSPAPMNQAL 240 Sbjct: 275 334 Query: 241 CGALEQICLEQGRSFRRMVSGAGHDAQLFAPKCPAAMIFVPSRAGIXXXXXXXXXXXXLA 300 Sbjct: 335 394 Query: 301 AGLNVLTALLYKLAYE 316 Sbjct: 395 410 >ECs0578 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 247 bits (630), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 0/316 (0%), Positives = 0/316 (0%), Gaps = 12/316 (3%) Query: 1 LAETFGPPLRTLEVVAFCEEEGSRFPLAFWGSGNVTGLYNGWVADSIADPEGVTLMEAMN 60 AE V A A Sbjct: 107 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARR 166 Query: 61 ACGLGTGGSRIDSEESSGRGADSARREDIGMYVELHIEQGILLEQSAEQIGVVQAIAGQR 120 G Sbjct: 167 WKPEILDGFTK------------ 214 Query: 121 RFTVKVTGTANHAGTTPMGLRRDALAGTAEMLCALERSAAKAGAPLVATAGRLEVIPGTP 180 Sbjct: 215 274 Query: 181 NVIPGEVQFTLDIRHSEXXXXXXXXXXXXXXXXXXXXXXXLALELVPTLATSPAPMNQAL 240 Sbjct: 275 334 Query: 241 CGALEQICLEQGRSFRRMVSGAGHDAQLFAPKCPAAMIFVPSRAGIXXXXXXXXXXXXLA 300 Sbjct: 335 394 Query: 301 AGLNVLTALLYKLAYE 316 Sbjct: 395 410 >BS_ylbB [R] COG0517 FOG: CBS domain Length = 411 Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 127/316 (40%), Positives = 175/316 (55%), Gaps = 12/316 (3%) Query: 1 LAETFGPPLRTLEVVAFCEEEGSRFPLAFWGSGNVTGLYNGWVADSIADPEGVTLMEAMN 60 L +G PLRT+EVVA EEEGSRFP FWGS N+ GL N +I D +G + ++AM Sbjct: 107 LKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMK 166 Query: 61 ACGLGTGGSRIDSEESSGRGADSARREDIGMYVELHIEQGILLEQSAEQIGVVQAIAGQR 120 ACG + + R+DI +VELHIEQG +LE + + IGVV AI GQR Sbjct: 167 ACGFTLPNAPL------------TPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQR 214 Query: 121 RFTVKVTGTANHAGTTPMGLRRDALAGTAEMLCALERSAAKAGAPLVATAGRLEVIPGTP 180 R+TV + G +NHAGTTPMG RRD + + + A + G PLV T G++E P T Sbjct: 215 RYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTV 274 Query: 181 NVIPGEVQFTLDIRHSEXXXXXXXXXXXXXXXXXXXXXXXLALELVPTLATSPAPMNQAL 240 NV+PG+ FT+D RH++ + +++ + P PMN+ L Sbjct: 275 NVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKEL 334 Query: 241 CGALEQICLEQGRSFRRMVSGAGHDAQLFAPKCPAAMIFVPSRAGIXXXXXXXXXXXXLA 300 L ++C + ++R M SGAGHDAQ+FAP+ P MIF+PS GI LA Sbjct: 335 VATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLA 394 Query: 301 AGLNVLTALLYKLAYE 316 G+ L +LY+LA++ Sbjct: 395 EGVKTLALMLYQLAWQ 410 >ylbB [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 0/316 (0%), Positives = 0/316 (0%), Gaps = 12/316 (3%) Query: 1 LAETFGPPLRTLEVVAFCEEEGSRFPLAFWGSGNVTGLYNGWVADSIADPEGVTLMEAMN 60 AE V A A Sbjct: 107 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARR 166 Query: 61 ACGLGTGGSRIDSEESSGRGADSARREDIGMYVELHIEQGILLEQSAEQIGVVQAIAGQR 120 G Sbjct: 167 WKPEILDGFTK------------ 214 Query: 121 RFTVKVTGTANHAGTTPMGLRRDALAGTAEMLCALERSAAKAGAPLVATAGRLEVIPGTP 180 Sbjct: 215 274 Query: 181 NVIPGEVQFTLDIRHSEXXXXXXXXXXXXXXXXXXXXXXXLALELVPTLATSPAPMNQAL 240 Sbjct: 275 334 Query: 241 CGALEQICLEQGRSFRRMVSGAGHDAQLFAPKCPAAMIFVPSRAGIXXXXXXXXXXXXLA 300 Sbjct: 335 394 Query: 301 AGLNVLTALLYKLAYE 316 Sbjct: 395 410 Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 0/316 (0%), Positives = 0/316 (0%), Gaps = 12/316 (3%) Query: 1 LAETFGPPLRTLEVVAFCEEEGSRFPLAFWGSGNVTGLYNGWVADSIADPEGVTLMEAMN 60 AE V A A Sbjct: 107 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARR 166 Query: 61 ACGLGTGGSRIDSEESSGRGADSARREDIGMYVELHIEQGILLEQSAEQIGVVQAIAGQR 120 G Sbjct: 167 WKPEILDGFTK------------ 214 Query: 121 RFTVKVTGTANHAGTTPMGLRRDALAGTAEMLCALERSAAKAGAPLVATAGRLEVIPGTP 180 Sbjct: 215 274 Query: 181 NVIPGEVQFTLDIRHSEXXXXXXXXXXXXXXXXXXXXXXXLALELVPTLATSPAPMNQAL 240 Sbjct: 275 334 Query: 241 CGALEQICLEQGRSFRRMVSGAGHDAQLFAPKCPAAMIFVPSRAGIXXXXXXXXXXXXLA 300 Sbjct: 335 394 Query: 301 AGLNVLTALLYKLAYE 316 Sbjct: 395 410 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,151,581 Number of extensions: 794444 Number of successful extensions: 1465 Number of sequences better than 1.0e-05: 24 Number of HSP's gapped: 1415 Number of HSP's successfully gapped: 24 Length of query: 318 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 212 Effective length of database: 26,153,027 Effective search space: 5544441724 Effective search space used: 5544441724 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)