BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0479.0017.p
         (159 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20874 [S] COG3195 Uncharacterized protein conserved in bacteria    140   6e-34
SMb21284_2 [S] COG3195 Uncharacterized protein conserved in bact...   117   7e-27

>SMb20874 [S] COG3195 Uncharacterized protein conserved in bacteria
          Length = 167

 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/158 (46%), Positives = 101/158 (63%), Gaps = 6/158 (3%)

Query: 3   KEEFVANLGGIFEHSPWVAEGAYKHTPFQ--SAAQLHGMMLDTARNAEHSRVEALLRAHP 60
           +++F+   GGIFEHSPWVAE AY        +A  +H  + +  R A  +    +LRAHP
Sbjct: 4   RDDFIRRFGGIFEHSPWVAERAYDRAASSGLTAGNVHSALCNAFRAASPAERLRVLRAHP 63

Query: 61  DLATRLQV----SPLSASEQQGAGLDRLSPEEFARLTELNRVYTEKFRFPFILAVRGKDK 116
           DLA +L V    +  S +EQ  AGLDRLSPEE +R T LN  YT+KF FPFI+AV+G  K
Sbjct: 64  DLAGKLAVAGELTADSKAEQASAGLDRLSPEEHSRFTGLNTTYTKKFGFPFIIAVKGLTK 123

Query: 117 DDIIQSIEARVNRSQEEEWEQALAEIGKITAFRLNDLI 154
           +DI+ + E R++ S+EEE+E A AE+ +I   RL  ++
Sbjct: 124 EDILAAFERRIDNSKEEEFETACAEVERIARLRLRSML 161


>SMb21284_2 [S] COG3195 Uncharacterized protein conserved in bacteria
          Length = 170

 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 7/161 (4%)

Query: 1   MSKEEFVANLGGIFEHSPWVAEGAYKH---TPFQSAAQLHGMMLDTARNAEHSRVEALLR 57
           +SK+ F+   GG+FEHS W+A  A+         +A  LH  +    R A      A+L 
Sbjct: 8   LSKDAFIDRFGGVFEHSDWIARRAFAGELGPANDTATGLHAALCAVFREASEEERLAVLT 67

Query: 58  AHPDLATRL----QVSPLSASEQQGAGLDRLSPEEFARLTELNRVYTEKFRFPFILAVRG 113
           AHPDLA +L    +++  S SEQ  AGLD L+ +E  R T LN  Y EKF FPFILAV+G
Sbjct: 68  AHPDLAGKLAQAKRLTESSTSEQASAGLDALTDQERERFTTLNNAYVEKFGFPFILAVKG 127

Query: 114 KDKDDIIQSIEARVNRSQEEEWEQALAEIGKITAFRLNDLI 154
           + KD+I+ + E R+   +E E+  A  ++ +I   RL D +
Sbjct: 128 RSKDEILAAFENRIGNDRETEFVTACRQVERIALLRLRDTL 168


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,668,650
Number of extensions: 355952
Number of successful extensions: 814
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 2
Length of query: 159
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 61
Effective length of database: 27,075,699
Effective search space: 1651617639
Effective search space used: 1651617639
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)