BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0016.p (309 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0701 [R] COG1079 Uncharacterized ABC-type transport system,... 165 1e-40 SMa1514 [R] COG1079 Uncharacterized ABC-type transport system, p... 150 4e-36 AGc3294 [R] COG1079 Uncharacterized ABC-type transport system, p... 144 2e-34 SMc00244 [R] COG1079 Uncharacterized ABC-type transport system, ... 142 1e-33 SMb20125 [R] COG1079 Uncharacterized ABC-type transport system, ... 137 2e-32 >BMEII0701 [R] COG1079 Uncharacterized ABC-type transport system, permease component Length = 304 Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 143/279 (51%), Gaps = 1/279 (0%) Query: 29 ERAGIIQLGAEGLMLMGAVTTCIVYIRSGNXXXXXXXXXXXXXXXXXXHAFLCVTLRANQ 88 ER+G++ LG EG+MLMGAV+ V +G+ FL +TL NQ Sbjct: 27 ERSGVLNLGVEGMMLMGAVSGFAVAQITGSAWLGLVAAVLVGALFAAVFGFLTLTLVTNQ 86 Query: 89 TMSGLAMTLFGSGLSAYLGKSISGIPLPGTSPKLDLGWVKGIPVVGDIFGRMDGLTWFSX 148 +GLA+T+ G G+SA LG+S G+P +P + + ++ +P++G D + + S Sbjct: 87 VATGLALTILGVGVSALLGESFVGLPGVRLNP-IYIPYLTDLPLIGRFLFGQDPIFYMSI 145 Query: 149 XXXXXXXXXIHRTSWGLHLRAVGDSPATADVMGIRVQLIRYSYXXXXXXXXXXXXXDMVL 208 + RT GL LRA+GDS +A +G+ V RY + L Sbjct: 146 ALVIGVAWFLFRTRAGLTLRAIGDSHGSAHALGVHVVRTRYLAVLFGGACAGLAGAQLSL 205 Query: 209 AYAPTWNEGLTAGRGWIAVGLVIFARWNPLRALFCAYFFGALDSLGFRIQLLGSIIPPYF 268 Y P W E +TAGRGWIA+ LV+FA W P R L AY FGA+ Q LG +P F Sbjct: 206 VYVPQWVENMTAGRGWIALALVVFASWRPWRVLVGAYLFGAVTIGQLHAQALGFGLPSQF 265 Query: 269 LKMIPYVVTILVLMYLGYRNRNKPSGTPESLGTPYIREQ 307 L +PY+ TI+VL+ + R TP SLG P++ ++ Sbjct: 266 LSALPYLATIVVLVIISRNKRLTMMNTPASLGKPFVPDR 304 >SMa1514 [R] COG1079 Uncharacterized ABC-type transport system, permease component Length = 306 Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/275 (32%), Positives = 136/275 (49%), Gaps = 1/275 (0%) Query: 29 ERAGIIQLGAEGLMLMGAVTTCIVYIRSGNXXXXXXXXXXXXXXXXXXHAFLCVTLRANQ 88 E++G++ LG EG+MLMGA I L +T NQ Sbjct: 29 EKSGVLNLGLEGMMLMGAAFAFWAVIAGLPMPVAIAAGALAGAATSLLFGVLALTFLTNQ 88 Query: 89 TMSGLAMTLFGSGLSAYLGKSISGIPLPGTSPKLDLGWVKGIPVVGDIFGRMDGLTWFSX 148 +GLA+ +FGSG+SA+LG+ P+ ++ + ++ IPVVG +F R D + + + Sbjct: 89 YAAGLALAIFGSGVSAFLGRGFGSAPIDALK-RVHIPFLSDIPVVGPMFFRFDPMVYLAI 147 Query: 149 XXXXXXXXXIHRTSWGLHLRAVGDSPATADVMGIRVQLIRYSYXXXXXXXXXXXXXDMVL 208 ++RT GL LR +G+SP T+ +G V IRY + + Sbjct: 148 GMFGLITWFLYRTKGGLILRTIGESPETSHAIGYPVIRIRYLAVLFGGLMAGLAGAYLSV 207 Query: 209 AYAPTWNEGLTAGRGWIAVGLVIFARWNPLRALFCAYFFGALDSLGFRIQLLGSIIPPYF 268 AY P W E +TAG+GWI++ LV+FA W PLR L A+ FG + L + Q LG +P Sbjct: 208 AYTPLWVENMTAGKGWISLALVVFATWRPLRVLIGAWLFGGMTILQLQGQALGIAVPSEL 267 Query: 269 LKMIPYVVTILVLMYLGYRNRNKPSGTPESLGTPY 303 L +PY+ TI+VL+ + + P SL P+ Sbjct: 268 LSALPYLATIIVLVIISQNRQLLTLHFPASLAKPF 302 >AGc3294 [R] COG1079 Uncharacterized ABC-type transport system, permease component Length = 289 Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 0/307 (0%), Positives = 0/307 (0%), Gaps = 1/307 (0%) Query: 1 MDFTTQLLIAAISXXXXXXXXXXXXXXNERAGIIQLGAEGLMLMGAVTTCIVYIRSGNXX 60 I+ + ++ + + + Sbjct: 2 SSMADSRETLTINAFVVGYPIKHSRSPIIHSYWLKKFGIAGSYTAVEVSPDDFPKFIATL 61 Query: 61 XXXXXXXXXXXXXXXXHAFLCVTLRANQTMSGLAMTLFGSGLSAYLGKSISGIPLPGTSP 120 H L + + + + G Sbjct: 62 KEGKPGAAVGGNATIPHKEAAYRLADHPDALAEELGAANTIWMEEGKLHATNTDGYGFVS 121 Query: 121 KLDLGWVKGIPVVGDIFGRMDGLTWFSXXXXXXXXXXIHRTSWGLHLRAVGDSPATADVM 180 G G + + + Sbjct: 122 -NLDERHPGWDKTQRAVVFGAGGASRAVIQSLRDRDVAEIHVVNRTVERARELADRFGPR 180 Query: 181 GIRVQLIRYSYXXXXXXXXXXXXXDMVLAYAPTWNEGLTAGRGWIAVGLVIFARWNPLRA 240 + + + +V P+ Sbjct: 181 VFSHPQAALQEVMHGAGLFVNTTSLGMNGTEAPHLDFSHLAANAVVTDIVYVPLKTPILN 240 Query: 241 LFCAYFFGALDSLGFRIQLLGSIIPPYFLKMIPYVVTILVLMYLGYRNRNKPSGTPESLG 300 Sbjct: 241 300 Query: 301 TPYIREQ 307 Sbjct: 301 307 >SMc00244 [R] COG1079 Uncharacterized ABC-type transport system, permease component Length = 306 Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/279 (36%), Positives = 141/279 (50%), Gaps = 1/279 (0%) Query: 29 ERAGIIQLGAEGLMLMGAVTTCIVYIRSGNXXXXXXXXXXXXXXXXXXHAFLCVTLRANQ 88 ER+G++ LG EG+M+MGAV SG+ FL +TL ANQ Sbjct: 29 ERSGVLNLGVEGMMIMGAVCAFAATQLSGSPYVGILAGIAAGAVFSLLFGFLTLTLVANQ 88 Query: 89 TMSGLAMTLFGSGLSAYLGKSISGIPLPGTSPKLDLGWVKGIPVVGDIFGRMDGLTWFSX 148 +GLA+TL G G+S LG+S G+ P + + + IPVVG + R D + + S Sbjct: 89 VATGLALTLLGLGVSGMLGESFLGMQGIKLQP-IAIPLLSKIPVVGPLLFRQDAIFYASV 147 Query: 149 XXXXXXXXXIHRTSWGLHLRAVGDSPATADVMGIRVQLIRYSYXXXXXXXXXXXXXDMVL 208 + R+ GL LRAVGDS A+A +G+ V L RY + L Sbjct: 148 AIVVGVHLFLFRSRAGLKLRAVGDSHASAHALGVNVILTRYLAVLFGGACAGLAGAQLSL 207 Query: 209 AYAPTWNEGLTAGRGWIAVGLVIFARWNPLRALFCAYFFGALDSLGFRIQLLGSIIPPYF 268 Y P W E ++AGRGWIA+ LV+FA W P R + Y FGA+ Q G IP F Sbjct: 208 VYTPQWVENMSAGRGWIALALVVFASWRPWRVVAGGYLFGAVSISQLHAQAFGIGIPSQF 267 Query: 269 LKMIPYVVTILVLMYLGYRNRNKPSGTPESLGTPYIREQ 307 L +PY+ TI+VL+ + + R TP SLG P++ ++ Sbjct: 268 LTALPYLATIVVLILISHNRRMTLINTPASLGKPFVPDR 306 >SMb20125 [R] COG1079 Uncharacterized ABC-type transport system, permease component Length = 310 Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 142/283 (50%), Gaps = 10/283 (3%) Query: 28 NERAGIIQLGAEGLMLMGAVTTCIVYIRSGNXXXXXXXXXXXXXXXXXXHAFLCVTLRAN 87 +ERAG++ +G EG+ML GA SG+ AF +T++A+ Sbjct: 34 SERAGVLNIGLEGVMLAGAFAGFAAAFTSGSILLGVAAAVAAGVLVGLLFAFFTITIKAD 93 Query: 88 QTMSGLAMTLFGSGLSAYLGK---SISGIPLPGTSPKLDLGWVKGIPVVGDIFGRMDGLT 144 Q + G A+ L G GL+A+L + S +G + P +DL W+ +P G+ F R + Sbjct: 94 QIVVGAAINLLGLGLTAFLFRAYFSSAGKGIEIAKP-VDLPWLSDLPFFGEAFFRQNAFV 152 Query: 145 WFSXXXXXXXXXXIHRTSWGLHLRAVGDSPATADVMGIRVQLIRYSYXXXXXXXXXXXXX 204 + + ++RTS+GL LRAVG+ P DV G V L RY Sbjct: 153 YSTLPVAALAVFVLYRTSFGLTLRAVGEHPKAVDVSGRSVALYRYGAVLICSALAALGGA 212 Query: 205 DMVLAYAPTWNEGLTAGRGWIAVGLVIFARWNPLRALFCAYFFGALDSLGFRIQLLGSII 264 + LA++ + EG+++GRG+IA+ +V+FARW+P+ A + FG +L ++Q + Sbjct: 213 FLTLAHSNQFVEGISSGRGFIALAVVVFARWSPIGAFIVSLLFGVFYALQLQLQAQPVLF 272 Query: 265 PPY-FLKMIPYVVTILVLMYLGYRNRNKPSGTPESLGTPYIRE 306 PY + +PYV+TI L+ + RNR TP LG Y + Sbjct: 273 LPYQLFQALPYVMTIAALILV--RNRVD---TPSMLGVAYKKS 310 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.143 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,258,626 Number of extensions: 676282 Number of successful extensions: 1577 Number of sequences better than 1.0e-05: 25 Number of HSP's gapped: 1506 Number of HSP's successfully gapped: 25 Length of query: 309 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 203 Effective length of database: 26,153,027 Effective search space: 5309064481 Effective search space used: 5309064481 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)